Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 DRAXINP1-201ENST00000437611 948 ntBASIC16.89■□□□□ 0.29
BEST3Q8N1M1 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 AC090616.6-201ENST00000582640 721 ntBASIC16.89■□□□□ 0.29
BEST3Q8N1M1 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 IGHV3-41-201ENST00000613121 348 ntBASIC16.89■□□□□ 0.29
BEST3Q8N1M1 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC16.89■□□□□ 0.29
BEST3Q8N1M1 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 TOB2P1-201ENST00000469761 992 ntBASIC16.88■□□□□ 0.29
BEST3Q8N1M1 AP000867.3-201ENST00000524675 377 ntBASIC16.88■□□□□ 0.29
BEST3Q8N1M1 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 AL691432.3-201ENST00000621860 400 ntBASIC16.88■□□□□ 0.29
BEST3Q8N1M1 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
BEST3Q8N1M1 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 MIR149-201ENST00000384879 89 ntBASIC16.87■□□□□ 0.29
BEST3Q8N1M1 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BEST3Q8N1M1 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BEST3Q8N1M1 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BEST3Q8N1M1 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BEST3Q8N1M1 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BEST3Q8N1M1 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
BEST3Q8N1M1 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
BEST3Q8N1M1 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
BEST3Q8N1M1 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BEST3Q8N1M1 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
BEST3Q8N1M1 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
BEST3Q8N1M1 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.86■□□□□ 0.29
BEST3Q8N1M1 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
BEST3Q8N1M1 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms