Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 FLJ16779-201ENST00000612722 7638 ntBASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PPP4R4Q6NUP7 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
PPP4R4Q6NUP7 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.46■□□□□ 0.38
PPP4R4Q6NUP7 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.46■□□□□ 0.38
PPP4R4Q6NUP7 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 MIR4785-201ENST00000585005 73 ntBASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PPP4R4Q6NUP7 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 NIFKP9-201ENST00000419265 221 ntBASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 AC026471.5-201ENST00000615068 467 ntBASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PPP4R4Q6NUP7 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms