Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF4P78317 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RNF4P78317 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF4P78317 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF4P78317 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC16.81■□□□□ 0.28
RNF4P78317 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RNF4P78317 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF4P78317 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.81■□□□□ 0.28
RNF4P78317 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF4P78317 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF4P78317 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF4P78317 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF4P78317 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RNF4P78317 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.81■□□□□ 0.28
RNF4P78317 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.81■□□□□ 0.28
RNF4P78317 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
RNF4P78317 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RNF4P78317 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.81■□□□□ 0.28
RNF4P78317 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.81■□□□□ 0.28
RNF4P78317 NPAP1P7-201ENST00000613027 823 ntBASIC16.81■□□□□ 0.28
RNF4P78317 IGHV3-41-201ENST00000613121 348 ntBASIC16.81■□□□□ 0.28
RNF4P78317 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF4P78317 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RNF4P78317 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.81■□□□□ 0.28
RNF4P78317 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.81■□□□□ 0.28
RNF4P78317 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF4P78317 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RNF4P78317 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF4P78317 LINC00602-201ENST00000629776 2065 ntBASIC16.81■□□□□ 0.28
RNF4P78317 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF4P78317 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF4P78317 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF4P78317 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF4P78317 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.8■□□□□ 0.28
RNF4P78317 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.8■□□□□ 0.28
RNF4P78317 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
RNF4P78317 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RNF4P78317 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF4P78317 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
RNF4P78317 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.8■□□□□ 0.28
RNF4P78317 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF4P78317 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
RNF4P78317 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.8■□□□□ 0.28
RNF4P78317 GUSBP12-201ENST00000513727 720 ntBASIC16.8■□□□□ 0.28
RNF4P78317 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RNF4P78317 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
RNF4P78317 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
RNF4P78317 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
RNF4P78317 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RNF4P78317 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.8■□□□□ 0.28
RNF4P78317 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
RNF4P78317 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF4P78317 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF4P78317 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF4P78317 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF4P78317 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.8■□□□□ 0.28
RNF4P78317 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
RNF4P78317 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 PHGDH-209ENST00000641074 1780 ntBASIC16.79■□□□□ 0.28
RNF4P78317 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
RNF4P78317 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.79■□□□□ 0.28
RNF4P78317 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.79■□□□□ 0.28
RNF4P78317 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
RNF4P78317 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 KRT18P1-202ENST00000452408 1331 ntBASIC16.79■□□□□ 0.28
RNF4P78317 AC104581.1-202ENST00000635932 2618 ntBASIC16.79■□□□□ 0.28
RNF4P78317 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.79■□□□□ 0.28
RNF4P78317 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.79■□□□□ 0.28
RNF4P78317 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.79■□□□□ 0.28
RNF4P78317 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.79■□□□□ 0.28
RNF4P78317 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.79■□□□□ 0.28
RNF4P78317 AP002383.4-201ENST00000442518 975 ntBASIC16.79■□□□□ 0.28
RNF4P78317 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.79■□□□□ 0.28
RNF4P78317 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.79■□□□□ 0.28
RNF4P78317 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
RNF4P78317 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.79■□□□□ 0.28
RNF4P78317 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.79■□□□□ 0.28
RNF4P78317 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.79■□□□□ 0.28
RNF4P78317 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
RNF4P78317 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms