Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
COL18A1P39060 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC23.9■■□□□ 1.42
COL18A1P39060 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC23.9■■□□□ 1.42
COL18A1P39060 AC136632.2-201ENST00000512891 861 ntBASIC23.9■■□□□ 1.42
COL18A1P39060 COX5A-206ENST00000568783 571 ntTSL 3 BASIC23.9■■□□□ 1.42
COL18A1P39060 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC23.9■■□□□ 1.42
COL18A1P39060 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC23.9■■□□□ 1.42
COL18A1P39060 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL18A1P39060 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
COL18A1P39060 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC23.9■■□□□ 1.42
COL18A1P39060 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.42
COL18A1P39060 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.42
COL18A1P39060 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
COL18A1P39060 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC23.89■■□□□ 1.42
COL18A1P39060 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC23.89■■□□□ 1.42
COL18A1P39060 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
COL18A1P39060 METTL21AP1-201ENST00000438852 635 ntBASIC23.89■■□□□ 1.42
COL18A1P39060 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
COL18A1P39060 AL022326.1-202ENST00000641533 845 ntBASIC23.89■■□□□ 1.42
COL18A1P39060 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
COL18A1P39060 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
COL18A1P39060 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
COL18A1P39060 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
COL18A1P39060 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
COL18A1P39060 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC23.89■■□□□ 1.41
COL18A1P39060 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC23.89■■□□□ 1.41
COL18A1P39060 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC23.88■■□□□ 1.41
COL18A1P39060 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL18A1P39060 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
COL18A1P39060 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL18A1P39060 MIR1199-201ENST00000621445 119 ntBASIC23.88■■□□□ 1.41
COL18A1P39060 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
COL18A1P39060 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL18A1P39060 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL18A1P39060 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
COL18A1P39060 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL18A1P39060 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
COL18A1P39060 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC23.88■■□□□ 1.41
COL18A1P39060 AC108073.2-201ENST00000464002 357 ntBASIC23.88■■□□□ 1.41
COL18A1P39060 MIR3687-2-201ENST00000577708 61 ntBASIC23.88■■□□□ 1.41
COL18A1P39060 MIR3687-1-201ENST00000614492 61 ntBASIC23.88■■□□□ 1.41
COL18A1P39060 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL18A1P39060 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
COL18A1P39060 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL18A1P39060 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL18A1P39060 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC23.87■■□□□ 1.41
COL18A1P39060 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC23.87■■□□□ 1.41
COL18A1P39060 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
COL18A1P39060 SPDYE21P-201ENST00000413323 827 ntBASIC23.87■■□□□ 1.41
COL18A1P39060 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
COL18A1P39060 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL18A1P39060 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC23.87■■□□□ 1.41
COL18A1P39060 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC23.87■■□□□ 1.41
COL18A1P39060 MTDHP5-201ENST00000598980 586 ntBASIC23.87■■□□□ 1.41
COL18A1P39060 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL18A1P39060 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL18A1P39060 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
COL18A1P39060 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL18A1P39060 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL18A1P39060 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL18A1P39060 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC23.86■■□□□ 1.41
COL18A1P39060 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
COL18A1P39060 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
COL18A1P39060 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
COL18A1P39060 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL18A1P39060 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
COL18A1P39060 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
COL18A1P39060 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
COL18A1P39060 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC23.86■■□□□ 1.41
COL18A1P39060 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL18A1P39060 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC23.86■■□□□ 1.41
COL18A1P39060 AC211486.1-202ENST00000416371 468 ntBASIC23.86■■□□□ 1.41
COL18A1P39060 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
COL18A1P39060 AC211476.1-201ENST00000503899 468 ntBASIC23.86■■□□□ 1.41
COL18A1P39060 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC23.86■■□□□ 1.41
COL18A1P39060 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC23.86■■□□□ 1.41
COL18A1P39060 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC23.86■■□□□ 1.41
COL18A1P39060 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL18A1P39060 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL18A1P39060 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC23.86■■□□□ 1.41
COL18A1P39060 AC093010.1-201ENST00000473625 1624 ntBASIC23.86■■□□□ 1.41
COL18A1P39060 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
COL18A1P39060 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC23.86■■□□□ 1.41
COL18A1P39060 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
COL18A1P39060 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC23.86■■□□□ 1.41
COL18A1P39060 LBH-203ENST00000404397 543 ntTSL 4 BASIC23.86■■□□□ 1.41
COL18A1P39060 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC23.86■■□□□ 1.41
COL18A1P39060 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
COL18A1P39060 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC23.86■■□□□ 1.41
COL18A1P39060 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC23.86■■□□□ 1.41
COL18A1P39060 AC004817.3-201ENST00000602957 2129 ntBASIC23.86■■□□□ 1.41
COL18A1P39060 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
COL18A1P39060 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC23.85■■□□□ 1.41
COL18A1P39060 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC23.85■■□□□ 1.41
COL18A1P39060 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL18A1P39060 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL18A1P39060 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
COL18A1P39060 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL18A1P39060 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
COL18A1P39060 PRYP5-201ENST00000451909 266 ntBASIC23.85■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms