Protein–RNA interactions for Protein: P31270

HOXA11, Homeobox protein Hox-A11, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA11P31270 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.61■□□□□ 0.73
HOXA11P31270 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.61■□□□□ 0.73
HOXA11P31270 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXA11P31270 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HOXA11P31270 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
HOXA11P31270 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXA11P31270 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
HOXA11P31270 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXA11P31270 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.6■□□□□ 0.73
HOXA11P31270 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXA11P31270 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.6■□□□□ 0.73
HOXA11P31270 SLC25A6P4-201ENST00000586535 553 ntBASIC19.6■□□□□ 0.73
HOXA11P31270 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.6■□□□□ 0.73
HOXA11P31270 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXA11P31270 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXA11P31270 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.6■□□□□ 0.73
HOXA11P31270 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXA11P31270 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXA11P31270 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.6■□□□□ 0.73
HOXA11P31270 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.6■□□□□ 0.73
HOXA11P31270 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA11P31270 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
HOXA11P31270 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.6■□□□□ 0.73
HOXA11P31270 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.6■□□□□ 0.73
HOXA11P31270 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXA11P31270 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.59■□□□□ 0.73
HOXA11P31270 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
HOXA11P31270 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA11P31270 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA11P31270 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXA11P31270 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.59■□□□□ 0.73
HOXA11P31270 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
HOXA11P31270 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
HOXA11P31270 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA11P31270 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA11P31270 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
HOXA11P31270 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA11P31270 MRPL3P1-201ENST00000400109 1033 ntBASIC19.59■□□□□ 0.73
HOXA11P31270 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.59■□□□□ 0.73
HOXA11P31270 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXA11P31270 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.59■□□□□ 0.73
HOXA11P31270 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA11P31270 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA11P31270 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
HOXA11P31270 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.59■□□□□ 0.73
HOXA11P31270 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.59■□□□□ 0.73
HOXA11P31270 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXA11P31270 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA11P31270 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.59■□□□□ 0.73
HOXA11P31270 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA11P31270 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HOXA11P31270 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA11P31270 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
HOXA11P31270 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
HOXA11P31270 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA11P31270 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA11P31270 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
HOXA11P31270 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.58■□□□□ 0.73
HOXA11P31270 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.58■□□□□ 0.73
HOXA11P31270 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
HOXA11P31270 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
HOXA11P31270 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HOXA11P31270 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HOXA11P31270 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HOXA11P31270 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HOXA11P31270 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.58■□□□□ 0.72
HOXA11P31270 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.58■□□□□ 0.72
HOXA11P31270 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.58■□□□□ 0.72
HOXA11P31270 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.58■□□□□ 0.72
HOXA11P31270 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.58■□□□□ 0.72
HOXA11P31270 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HOXA11P31270 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
HOXA11P31270 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.58■□□□□ 0.72
HOXA11P31270 TP73-AS1-207ENST00000624167 988 ntBASIC19.58■□□□□ 0.72
HOXA11P31270 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HOXA11P31270 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HOXA11P31270 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.72
HOXA11P31270 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
HOXA11P31270 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
HOXA11P31270 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
HOXA11P31270 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HOXA11P31270 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HOXA11P31270 AL138781.2-201ENST00000617896 1843 ntBASIC19.58■□□□□ 0.72
HOXA11P31270 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms