Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.13■□□□□ 0.65
BDNFP23560 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.13■□□□□ 0.65
BDNFP23560 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
BDNFP23560 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.13■□□□□ 0.65
BDNFP23560 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.13■□□□□ 0.65
BDNFP23560 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
BDNFP23560 AC068472.1-201ENST00000474589 881 ntBASIC19.13■□□□□ 0.65
BDNFP23560 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.13■□□□□ 0.65
BDNFP23560 AC104819.1-201ENST00000504587 486 ntBASIC19.13■□□□□ 0.65
BDNFP23560 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.13■□□□□ 0.65
BDNFP23560 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.13■□□□□ 0.65
BDNFP23560 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.13■□□□□ 0.65
BDNFP23560 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
BDNFP23560 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.13■□□□□ 0.65
BDNFP23560 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.13■□□□□ 0.65
BDNFP23560 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
BDNFP23560 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
BDNFP23560 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BDNFP23560 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
BDNFP23560 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
BDNFP23560 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.12■□□□□ 0.65
BDNFP23560 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.12■□□□□ 0.65
BDNFP23560 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.12■□□□□ 0.65
BDNFP23560 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
BDNFP23560 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
BDNFP23560 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
BDNFP23560 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.12■□□□□ 0.65
BDNFP23560 PHGDH-209ENST00000641074 1780 ntBASIC19.12■□□□□ 0.65
BDNFP23560 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
BDNFP23560 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
BDNFP23560 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
BDNFP23560 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
BDNFP23560 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.12■□□□□ 0.65
BDNFP23560 NUS1P1-201ENST00000446295 882 ntBASIC19.12■□□□□ 0.65
BDNFP23560 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
BDNFP23560 KRT17P6-201ENST00000453795 1220 ntBASIC19.12■□□□□ 0.65
BDNFP23560 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
BDNFP23560 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.12■□□□□ 0.65
BDNFP23560 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
BDNFP23560 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.12■□□□□ 0.65
BDNFP23560 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
BDNFP23560 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.12■□□□□ 0.65
BDNFP23560 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
BDNFP23560 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
BDNFP23560 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
BDNFP23560 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.11■□□□□ 0.65
BDNFP23560 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
BDNFP23560 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.11■□□□□ 0.65
BDNFP23560 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
BDNFP23560 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
BDNFP23560 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.11■□□□□ 0.65
BDNFP23560 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
BDNFP23560 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 VENTXP7-201ENST00000475503 772 ntBASIC19.11■□□□□ 0.65
BDNFP23560 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.11■□□□□ 0.65
BDNFP23560 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.11■□□□□ 0.65
BDNFP23560 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.11■□□□□ 0.65
BDNFP23560 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.11■□□□□ 0.65
BDNFP23560 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.11■□□□□ 0.65
BDNFP23560 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 AC009154.2-201ENST00000621177 724 ntBASIC19.11■□□□□ 0.65
BDNFP23560 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
BDNFP23560 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
BDNFP23560 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
BDNFP23560 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
BDNFP23560 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
BDNFP23560 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.1■□□□□ 0.65
BDNFP23560 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms