Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RB1P06400 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RB1P06400 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RB1P06400 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RB1P06400 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
RB1P06400 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RB1P06400 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
RB1P06400 AC009947.1-201ENST00000444350 727 ntBASIC19.18■□□□□ 0.66
RB1P06400 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC19.18■□□□□ 0.66
RB1P06400 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.18■□□□□ 0.66
RB1P06400 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
RB1P06400 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.18■□□□□ 0.66
RB1P06400 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
RB1P06400 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.18■□□□□ 0.66
RB1P06400 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RB1P06400 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.18■□□□□ 0.66
RB1P06400 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RB1P06400 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.18■□□□□ 0.66
RB1P06400 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RB1P06400 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.18■□□□□ 0.66
RB1P06400 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.18■□□□□ 0.66
RB1P06400 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RB1P06400 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.18■□□□□ 0.66
RB1P06400 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
RB1P06400 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RB1P06400 AL032819.2-201ENST00000624543 2162 ntBASIC19.17■□□□□ 0.66
RB1P06400 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RB1P06400 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RB1P06400 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RB1P06400 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RB1P06400 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
RB1P06400 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RB1P06400 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.17■□□□□ 0.66
RB1P06400 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.17■□□□□ 0.66
RB1P06400 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.17■□□□□ 0.66
RB1P06400 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19.17■□□□□ 0.66
RB1P06400 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.17■□□□□ 0.66
RB1P06400 LINC02084-201ENST00000606069 1096 ntBASIC19.17■□□□□ 0.66
RB1P06400 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
RB1P06400 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RB1P06400 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RB1P06400 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RB1P06400 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RB1P06400 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RB1P06400 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
RB1P06400 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.17■□□□□ 0.66
RB1P06400 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RB1P06400 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.16■□□□□ 0.66
RB1P06400 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.16■□□□□ 0.66
RB1P06400 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.16■□□□□ 0.66
RB1P06400 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.16■□□□□ 0.66
RB1P06400 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RB1P06400 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.16■□□□□ 0.66
RB1P06400 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.16■□□□□ 0.66
RB1P06400 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RB1P06400 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RB1P06400 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
RB1P06400 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RB1P06400 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
RB1P06400 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.16■□□□□ 0.66
RB1P06400 AC007967.2-201ENST00000432613 625 ntBASIC19.16■□□□□ 0.66
RB1P06400 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.16■□□□□ 0.66
RB1P06400 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.16■□□□□ 0.66
RB1P06400 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.16■□□□□ 0.66
RB1P06400 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.16■□□□□ 0.66
RB1P06400 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.16■□□□□ 0.66
RB1P06400 MIR1199-201ENST00000621445 119 ntBASIC19.16■□□□□ 0.66
RB1P06400 AL022326.1-202ENST00000641533 845 ntBASIC19.16■□□□□ 0.66
RB1P06400 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.16■□□□□ 0.66
RB1P06400 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RB1P06400 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
RB1P06400 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RB1P06400 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
RB1P06400 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
RB1P06400 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RB1P06400 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RB1P06400 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RB1P06400 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
RB1P06400 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RB1P06400 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.15■□□□□ 0.66
RB1P06400 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RB1P06400 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.15■□□□□ 0.66
RB1P06400 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RB1P06400 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RB1P06400 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
RB1P06400 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RB1P06400 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RB1P06400 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.15■□□□□ 0.66
RB1P06400 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RB1P06400 DNAJB3-202ENST00000449667 1266 ntBASIC19.15■□□□□ 0.66
RB1P06400 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.15■□□□□ 0.66
RB1P06400 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC19.15■□□□□ 0.66
RB1P06400 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.15■□□□□ 0.66
RB1P06400 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.15■□□□□ 0.66
RB1P06400 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.15■□□□□ 0.66
RB1P06400 AC006557.2-201ENST00000592985 1240 ntBASIC19.15■□□□□ 0.66
RB1P06400 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
RB1P06400 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC19.15■□□□□ 0.66
RB1P06400 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RB1P06400 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms