Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
RAPGEF3O95398 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC27.12■■□□□ 1.93
RAPGEF3O95398 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC27.12■■□□□ 1.93
RAPGEF3O95398 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC27.12■■□□□ 1.93
RAPGEF3O95398 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
RAPGEF3O95398 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC27.12■■□□□ 1.93
RAPGEF3O95398 LINC01006-201ENST00000333319 2292 ntBASIC27.11■■□□□ 1.93
RAPGEF3O95398 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC27.11■■□□□ 1.93
RAPGEF3O95398 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC27.11■■□□□ 1.93
RAPGEF3O95398 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
RAPGEF3O95398 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC27.11■■□□□ 1.93
RAPGEF3O95398 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
RAPGEF3O95398 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC27.11■■□□□ 1.93
RAPGEF3O95398 KLK8-202ENST00000320838 456 ntTSL 5 BASIC27.11■■□□□ 1.93
RAPGEF3O95398 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
RAPGEF3O95398 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
RAPGEF3O95398 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC27.11■■□□□ 1.93
RAPGEF3O95398 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC27.11■■□□□ 1.93
RAPGEF3O95398 AC004449.1-201ENST00000564240 433 ntBASIC27.11■■□□□ 1.93
RAPGEF3O95398 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC27.11■■□□□ 1.93
RAPGEF3O95398 AL589182.2-201ENST00000619332 1049 ntBASIC27.11■■□□□ 1.93
RAPGEF3O95398 AL035252.4-201ENST00000624174 288 ntBASIC27.11■■□□□ 1.93
RAPGEF3O95398 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC27.11■■□□□ 1.93
RAPGEF3O95398 AF228730.6-201ENST00000641497 218 ntBASIC27.11■■□□□ 1.93
RAPGEF3O95398 AC084121.3-201ENST00000641716 218 ntBASIC27.11■■□□□ 1.93
RAPGEF3O95398 AC105233.6-201ENST00000642093 218 ntBASIC27.11■■□□□ 1.93
RAPGEF3O95398 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
RAPGEF3O95398 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
RAPGEF3O95398 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
RAPGEF3O95398 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC27.1■■□□□ 1.93
RAPGEF3O95398 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
RAPGEF3O95398 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
RAPGEF3O95398 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
RAPGEF3O95398 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC27.1■■□□□ 1.93
RAPGEF3O95398 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
RAPGEF3O95398 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC27.1■■□□□ 1.93
RAPGEF3O95398 IGHV3-65-201ENST00000523210 341 ntBASIC27.1■■□□□ 1.93
RAPGEF3O95398 RBM7-207ENST00000544582 692 ntTSL 3 BASIC27.1■■□□□ 1.93
RAPGEF3O95398 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC27.1■■□□□ 1.93
RAPGEF3O95398 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC27.1■■□□□ 1.93
RAPGEF3O95398 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC27.1■■□□□ 1.93
RAPGEF3O95398 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
RAPGEF3O95398 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
RAPGEF3O95398 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
RAPGEF3O95398 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
RAPGEF3O95398 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
RAPGEF3O95398 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
RAPGEF3O95398 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
RAPGEF3O95398 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC27.1■■□□□ 1.93
RAPGEF3O95398 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
RAPGEF3O95398 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC27.09■■□□□ 1.93
RAPGEF3O95398 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
RAPGEF3O95398 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC27.09■■□□□ 1.93
RAPGEF3O95398 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC27.09■■□□□ 1.93
RAPGEF3O95398 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC27.09■■□□□ 1.93
RAPGEF3O95398 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
RAPGEF3O95398 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC27.09■■□□□ 1.93
RAPGEF3O95398 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC27.09■■□□□ 1.93
RAPGEF3O95398 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC27.09■■□□□ 1.93
RAPGEF3O95398 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC27.09■■□□□ 1.93
RAPGEF3O95398 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC27.09■■□□□ 1.93
RAPGEF3O95398 LSM12-202ENST00000585388 942 ntTSL 3 BASIC27.09■■□□□ 1.93
RAPGEF3O95398 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC27.09■■□□□ 1.93
RAPGEF3O95398 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC27.09■■□□□ 1.93
RAPGEF3O95398 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
RAPGEF3O95398 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC27.09■■□□□ 1.93
RAPGEF3O95398 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
RAPGEF3O95398 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC27.08■■□□□ 1.93
RAPGEF3O95398 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC27.08■■□□□ 1.93
RAPGEF3O95398 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
RAPGEF3O95398 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC27.08■■□□□ 1.93
RAPGEF3O95398 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
RAPGEF3O95398 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC27.08■■□□□ 1.93
RAPGEF3O95398 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
RAPGEF3O95398 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
RAPGEF3O95398 AC005034.1-201ENST00000426657 489 ntBASIC27.08■■□□□ 1.93
RAPGEF3O95398 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC27.08■■□□□ 1.93
RAPGEF3O95398 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC27.08■■□□□ 1.93
RAPGEF3O95398 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC27.08■■□□□ 1.93
RAPGEF3O95398 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC27.08■■□□□ 1.93
RAPGEF3O95398 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC27.08■■□□□ 1.93
RAPGEF3O95398 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC27.08■■□□□ 1.93
RAPGEF3O95398 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
RAPGEF3O95398 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
RAPGEF3O95398 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC27.07■■□□□ 1.92
RAPGEF3O95398 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC27.07■■□□□ 1.92
RAPGEF3O95398 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
RAPGEF3O95398 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC27.07■■□□□ 1.92
RAPGEF3O95398 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC27.07■■□□□ 1.92
RAPGEF3O95398 AC109322.1-201ENST00000524499 1264 ntBASIC27.07■■□□□ 1.92
RAPGEF3O95398 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC27.07■■□□□ 1.92
RAPGEF3O95398 AC008667.4-201ENST00000607370 168 ntBASIC27.07■■□□□ 1.92
RAPGEF3O95398 AC004877.2-201ENST00000623941 599 ntBASIC27.07■■□□□ 1.92
RAPGEF3O95398 AL513210.1-201ENST00000629608 234 ntBASIC27.07■■□□□ 1.92
RAPGEF3O95398 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
RAPGEF3O95398 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
RAPGEF3O95398 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC27.07■■□□□ 1.92
RAPGEF3O95398 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
RAPGEF3O95398 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
RAPGEF3O95398 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC27.06■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms