Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC3O15379 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC3O15379 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC3O15379 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC3O15379 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.72■□□□□ 0.43
HDAC3O15379 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC3O15379 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC3O15379 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC3O15379 MESTP1-201ENST00000404287 994 ntBASIC17.72■□□□□ 0.43
HDAC3O15379 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.72■□□□□ 0.43
HDAC3O15379 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.72■□□□□ 0.43
HDAC3O15379 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.72■□□□□ 0.43
HDAC3O15379 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC3O15379 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC3O15379 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
HDAC3O15379 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
HDAC3O15379 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC3O15379 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC3O15379 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC3O15379 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.72■□□□□ 0.43
HDAC3O15379 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC3O15379 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
HDAC3O15379 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC3O15379 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.71■□□□□ 0.43
HDAC3O15379 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
HDAC3O15379 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.71■□□□□ 0.43
HDAC3O15379 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC3O15379 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
HDAC3O15379 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.71■□□□□ 0.43
HDAC3O15379 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC3O15379 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC3O15379 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC3O15379 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC3O15379 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HDAC3O15379 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC3O15379 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC3O15379 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.71■□□□□ 0.43
HDAC3O15379 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC3O15379 RARRES2P10-201ENST00000564312 460 ntBASIC17.71■□□□□ 0.43
HDAC3O15379 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HDAC3O15379 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
HDAC3O15379 AC073648.6-201ENST00000641589 218 ntBASIC17.71■□□□□ 0.43
HDAC3O15379 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC3O15379 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC3O15379 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC3O15379 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.71■□□□□ 0.43
HDAC3O15379 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC3O15379 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC3O15379 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.71■□□□□ 0.43
HDAC3O15379 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC3O15379 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDAC3O15379 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
HDAC3O15379 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
HDAC3O15379 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC3O15379 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
HDAC3O15379 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
HDAC3O15379 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC3O15379 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC3O15379 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC3O15379 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC3O15379 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC3O15379 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
HDAC3O15379 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.7■□□□□ 0.42
HDAC3O15379 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.7■□□□□ 0.42
HDAC3O15379 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC3O15379 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HDAC3O15379 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.7■□□□□ 0.42
HDAC3O15379 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC3O15379 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC3O15379 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC3O15379 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HDAC3O15379 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.7■□□□□ 0.42
HDAC3O15379 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.7■□□□□ 0.42
HDAC3O15379 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
HDAC3O15379 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC3O15379 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC3O15379 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC3O15379 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC3O15379 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.7■□□□□ 0.42
HDAC3O15379 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.7■□□□□ 0.42
HDAC3O15379 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HDAC3O15379 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.69■□□□□ 0.42
HDAC3O15379 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
HDAC3O15379 AD000864.1-201ENST00000624076 2295 ntBASIC17.69■□□□□ 0.42
HDAC3O15379 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC3O15379 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC3O15379 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
HDAC3O15379 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC3O15379 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC3O15379 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.69■□□□□ 0.42
HDAC3O15379 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC3O15379 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC3O15379 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.69■□□□□ 0.42
HDAC3O15379 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.69■□□□□ 0.42
HDAC3O15379 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.69■□□□□ 0.42
HDAC3O15379 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.69■□□□□ 0.42
HDAC3O15379 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.69■□□□□ 0.42
HDAC3O15379 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.69■□□□□ 0.42
HDAC3O15379 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC3O15379 HOXB1-202ENST00000577092 1414 ntBASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms