Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CACNA1AO00555 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17■□□□□ 0.31
CACNA1AO00555 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17■□□□□ 0.31
CACNA1AO00555 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17■□□□□ 0.31
CACNA1AO00555 KRT17P7-201ENST00000451704 1104 ntBASIC17■□□□□ 0.31
CACNA1AO00555 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17■□□□□ 0.31
CACNA1AO00555 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17■□□□□ 0.31
CACNA1AO00555 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
CACNA1AO00555 ARL16-210ENST00000574938 751 ntTSL 2 BASIC17■□□□□ 0.31
CACNA1AO00555 AL805961.1-202ENST00000641562 540 ntBASIC17■□□□□ 0.31
CACNA1AO00555 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CACNA1AO00555 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CACNA1AO00555 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CACNA1AO00555 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
CACNA1AO00555 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.99■□□□□ 0.31
CACNA1AO00555 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CACNA1AO00555 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CACNA1AO00555 KRT18P41-201ENST00000518924 1277 ntBASIC16.99■□□□□ 0.31
CACNA1AO00555 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.99■□□□□ 0.31
CACNA1AO00555 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CACNA1AO00555 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CACNA1AO00555 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CACNA1AO00555 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.99■□□□□ 0.31
CACNA1AO00555 AC004790.2-201ENST00000623588 572 ntBASIC16.99■□□□□ 0.31
CACNA1AO00555 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CACNA1AO00555 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.99■□□□□ 0.31
CACNA1AO00555 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CACNA1AO00555 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CACNA1AO00555 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.99■□□□□ 0.31
CACNA1AO00555 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CACNA1AO00555 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CACNA1AO00555 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.99■□□□□ 0.31
CACNA1AO00555 AC106886.1-201ENST00000568660 600 ntBASIC16.99■□□□□ 0.31
CACNA1AO00555 TMEM261P1-201ENST00000604899 340 ntBASIC16.99■□□□□ 0.31
CACNA1AO00555 MIR6787-201ENST00000616675 61 ntBASIC16.99■□□□□ 0.31
CACNA1AO00555 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC16.99■□□□□ 0.31
CACNA1AO00555 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CACNA1AO00555 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CACNA1AO00555 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CACNA1AO00555 NCF1C-201ENST00000438382 1427 ntBASIC16.98■□□□□ 0.31
CACNA1AO00555 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CACNA1AO00555 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CACNA1AO00555 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CACNA1AO00555 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CACNA1AO00555 SPDYE21P-201ENST00000413323 827 ntBASIC16.98■□□□□ 0.31
CACNA1AO00555 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.98■□□□□ 0.31
CACNA1AO00555 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.98■□□□□ 0.31
CACNA1AO00555 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CACNA1AO00555 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
CACNA1AO00555 AF106564.1-201ENST00000607058 2553 ntBASIC16.98■□□□□ 0.31
CACNA1AO00555 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CACNA1AO00555 SPTLC1P1-201ENST00000447199 261 ntBASIC16.98■□□□□ 0.31
CACNA1AO00555 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CACNA1AO00555 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CACNA1AO00555 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.98■□□□□ 0.31
CACNA1AO00555 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.98■□□□□ 0.31
CACNA1AO00555 SLC25A39P2-201ENST00000537614 270 ntBASIC16.98■□□□□ 0.31
CACNA1AO00555 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CACNA1AO00555 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
CACNA1AO00555 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CACNA1AO00555 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CACNA1AO00555 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC16.98■□□□□ 0.31
CACNA1AO00555 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC16.97■□□□□ 0.31
CACNA1AO00555 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.97■□□□□ 0.31
CACNA1AO00555 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CACNA1AO00555 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
CACNA1AO00555 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
CACNA1AO00555 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CACNA1AO00555 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CACNA1AO00555 AC125807.1-201ENST00000483097 614 ntBASIC16.97■□□□□ 0.31
CACNA1AO00555 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.97■□□□□ 0.31
CACNA1AO00555 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.97■□□□□ 0.31
CACNA1AO00555 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.97■□□□□ 0.31
CACNA1AO00555 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC16.97■□□□□ 0.31
CACNA1AO00555 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CACNA1AO00555 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.97■□□□□ 0.31
CACNA1AO00555 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.97■□□□□ 0.31
CACNA1AO00555 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC16.97■□□□□ 0.31
CACNA1AO00555 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC16.97■□□□□ 0.31
CACNA1AO00555 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CACNA1AO00555 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CACNA1AO00555 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CACNA1AO00555 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CACNA1AO00555 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CACNA1AO00555 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
CACNA1AO00555 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.97■□□□□ 0.31
CACNA1AO00555 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CACNA1AO00555 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.97■□□□□ 0.31
CACNA1AO00555 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC16.97■□□□□ 0.31
CACNA1AO00555 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.96■□□□□ 0.31
CACNA1AO00555 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CACNA1AO00555 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC16.96■□□□□ 0.31
CACNA1AO00555 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC16.96■□□□□ 0.31
CACNA1AO00555 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CACNA1AO00555 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
CACNA1AO00555 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
CACNA1AO00555 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CACNA1AO00555 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CACNA1AO00555 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CACNA1AO00555 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms