Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 AC112777.1-201ENST00000540175 1423 ntBASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 MMAB-206ENST00000540016 945 ntTSL 3 BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 AC110285.5-201ENST00000611501 352 ntBASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 CABP2-204ENST00000636477 941 ntTSL 5 BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
CHMP1AQ9HD42 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
CHMP1AQ9HD42 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
CHMP1AQ9HD42 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CHMP1AQ9HD42 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
CHMP1AQ9HD42 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 NIFKP9-201ENST00000419265 221 ntBASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 KRT8P32-201ENST00000512863 1461 ntBASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 AC134043.2-201ENST00000624206 2238 ntBASIC15.7■□□□□ 0.1
CHMP1AQ9HD42 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 KRT8P3-201ENST00000519669 1449 ntBASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 ESRRAP1-201ENST00000400596 1257 ntBASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 AC124016.1-201ENST00000609552 612 ntBASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms