Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 AC090164.3-201ENST00000610780 2143 ntBASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 AP003733.1-201ENST00000491725 852 ntBASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 AC073592.3-201ENST00000625118 1834 ntBASIC17.17■□□□□ 0.34
PTCHD1Q96NR3 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD1Q96NR3 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms