Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LRCH3Q96II8 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.66■□□□□ 0.74
LRCH3Q96II8 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
LRCH3Q96II8 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LRCH3Q96II8 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.66■□□□□ 0.74
LRCH3Q96II8 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LRCH3Q96II8 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LRCH3Q96II8 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LRCH3Q96II8 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LRCH3Q96II8 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LRCH3Q96II8 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LRCH3Q96II8 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 MEIS3P1-201ENST00000495167 958 ntBASIC19.65■□□□□ 0.74
LRCH3Q96II8 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LRCH3Q96II8 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LRCH3Q96II8 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LRCH3Q96II8 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LRCH3Q96II8 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LRCH3Q96II8 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
LRCH3Q96II8 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LRCH3Q96II8 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
LRCH3Q96II8 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LRCH3Q96II8 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.64■□□□□ 0.74
LRCH3Q96II8 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LRCH3Q96II8 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.64■□□□□ 0.73
LRCH3Q96II8 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LRCH3Q96II8 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
LRCH3Q96II8 MRPL20P1-201ENST00000400819 433 ntBASIC19.64■□□□□ 0.73
LRCH3Q96II8 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.64■□□□□ 0.73
LRCH3Q96II8 MKNK2P1-201ENST00000437526 628 ntBASIC19.64■□□□□ 0.73
LRCH3Q96II8 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.64■□□□□ 0.73
LRCH3Q96II8 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.64■□□□□ 0.73
LRCH3Q96II8 AC108751.1-201ENST00000490852 363 ntBASIC19.64■□□□□ 0.73
LRCH3Q96II8 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
LRCH3Q96II8 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LRCH3Q96II8 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.64■□□□□ 0.73
LRCH3Q96II8 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.64■□□□□ 0.73
LRCH3Q96II8 AL513190.1-201ENST00000621254 727 ntBASIC19.64■□□□□ 0.73
LRCH3Q96II8 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LRCH3Q96II8 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC19.64■□□□□ 0.73
LRCH3Q96II8 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LRCH3Q96II8 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LRCH3Q96II8 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
LRCH3Q96II8 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LRCH3Q96II8 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LRCH3Q96II8 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LRCH3Q96II8 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LRCH3Q96II8 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LRCH3Q96II8 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LRCH3Q96II8 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.63■□□□□ 0.73
LRCH3Q96II8 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
LRCH3Q96II8 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LRCH3Q96II8 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.63■□□□□ 0.73
LRCH3Q96II8 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LRCH3Q96II8 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.63■□□□□ 0.73
LRCH3Q96II8 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LRCH3Q96II8 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
LRCH3Q96II8 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LRCH3Q96II8 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LRCH3Q96II8 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.63■□□□□ 0.73
LRCH3Q96II8 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC19.63■□□□□ 0.73
LRCH3Q96II8 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.63■□□□□ 0.73
LRCH3Q96II8 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.63■□□□□ 0.73
LRCH3Q96II8 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.63■□□□□ 0.73
LRCH3Q96II8 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LRCH3Q96II8 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.63■□□□□ 0.73
LRCH3Q96II8 SERF2-217ENST00000630046 862 ntTSL 5 BASIC19.63■□□□□ 0.73
LRCH3Q96II8 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LRCH3Q96II8 AC087289.5-201ENST00000586076 3175 ntBASIC19.63■□□□□ 0.73
LRCH3Q96II8 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LRCH3Q96II8 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.63■□□□□ 0.73
LRCH3Q96II8 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LRCH3Q96II8 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LRCH3Q96II8 SDHAP1-207ENST00000440850 2000 ntBASIC19.63■□□□□ 0.73
LRCH3Q96II8 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
LRCH3Q96II8 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LRCH3Q96II8 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
LRCH3Q96II8 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
LRCH3Q96II8 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.62■□□□□ 0.73
LRCH3Q96II8 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
LRCH3Q96II8 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms