Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
CCDC144BQ3MJ40 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
CCDC144BQ3MJ40 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC21.14■□□□□ 0.98
CCDC144BQ3MJ40 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC144BQ3MJ40 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC144BQ3MJ40 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
CCDC144BQ3MJ40 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 AL845331.1-201ENST00000424978 1190 ntBASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 CHCHD2P8-201ENST00000429873 447 ntBASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 UNC93B7-201ENST00000509439 705 ntBASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
CCDC144BQ3MJ40 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 TSPY22P-201ENST00000427496 604 ntBASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 MPI-205ENST00000562606 1052 ntTSL 3 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 AC111152.3-201ENST00000569699 673 ntBASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC144BQ3MJ40 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 AL109659.2-201ENST00000606809 1674 ntBASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 RNF126P1-202ENST00000569893 925 ntBASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 IL11-204ENST00000590625 1028 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 AC008556.1-201ENST00000610908 2040 ntBASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC144BQ3MJ40 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms