Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN1P58418 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.31■□□□□ 0.2
CLRN1P58418 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.31■□□□□ 0.2
CLRN1P58418 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN1P58418 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.31■□□□□ 0.2
CLRN1P58418 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN1P58418 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
CLRN1P58418 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN1P58418 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN1P58418 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.31■□□□□ 0.2
CLRN1P58418 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.31■□□□□ 0.2
CLRN1P58418 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CLRN1P58418 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.31■□□□□ 0.2
CLRN1P58418 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN1P58418 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
CLRN1P58418 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN1P58418 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLRN1P58418 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.3■□□□□ 0.2
CLRN1P58418 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.3■□□□□ 0.2
CLRN1P58418 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLRN1P58418 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.3■□□□□ 0.2
CLRN1P58418 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CLRN1P58418 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.3■□□□□ 0.2
CLRN1P58418 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.3■□□□□ 0.2
CLRN1P58418 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CLRN1P58418 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLRN1P58418 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC16.3■□□□□ 0.2
CLRN1P58418 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CLRN1P58418 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLRN1P58418 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.3■□□□□ 0.2
CLRN1P58418 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CLRN1P58418 SLC25A3P1-201ENST00000443844 931 ntBASIC16.3■□□□□ 0.2
CLRN1P58418 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.3■□□□□ 0.2
CLRN1P58418 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC16.3■□□□□ 0.2
CLRN1P58418 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.3■□□□□ 0.2
CLRN1P58418 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.3■□□□□ 0.2
CLRN1P58418 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLRN1P58418 AC092865.7-201ENST00000641832 219 ntBASIC16.3■□□□□ 0.2
CLRN1P58418 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.3■□□□□ 0.2
CLRN1P58418 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLRN1P58418 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CLRN1P58418 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLRN1P58418 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLRN1P58418 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CLRN1P58418 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.3■□□□□ 0.2
CLRN1P58418 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLRN1P58418 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLRN1P58418 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLRN1P58418 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLRN1P58418 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CLRN1P58418 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.29■□□□□ 0.2
CLRN1P58418 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CLRN1P58418 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CLRN1P58418 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
CLRN1P58418 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC16.29■□□□□ 0.2
CLRN1P58418 SEC1P-202ENST00000473944 940 ntBASIC16.29■□□□□ 0.2
CLRN1P58418 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC16.29■□□□□ 0.2
CLRN1P58418 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.29■□□□□ 0.2
CLRN1P58418 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.29■□□□□ 0.2
CLRN1P58418 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.29■□□□□ 0.2
CLRN1P58418 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.29■□□□□ 0.2
CLRN1P58418 AC141257.4-201ENST00000634557 245 ntBASIC16.29■□□□□ 0.2
CLRN1P58418 AC136944.6-201ENST00000634818 245 ntBASIC16.29■□□□□ 0.2
CLRN1P58418 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.29■□□□□ 0.2
CLRN1P58418 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CLRN1P58418 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
CLRN1P58418 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.29■□□□□ 0.2
CLRN1P58418 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.29■□□□□ 0.2
CLRN1P58418 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 AC018470.1-201ENST00000624790 3129 ntBASIC16.29■□□□□ 0.2
CLRN1P58418 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.29■□□□□ 0.2
CLRN1P58418 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLRN1P58418 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLRN1P58418 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CLRN1P58418 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CLRN1P58418 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLRN1P58418 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLRN1P58418 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLRN1P58418 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLRN1P58418 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLRN1P58418 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms