Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIM2P55344 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.3■□□□□ 0.36
LIM2P55344 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
LIM2P55344 LINC01126-201ENST00000623515 1646 ntBASIC17.29■□□□□ 0.36
LIM2P55344 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIM2P55344 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIM2P55344 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.29■□□□□ 0.36
LIM2P55344 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.29■□□□□ 0.36
LIM2P55344 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIM2P55344 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.29■□□□□ 0.36
LIM2P55344 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.29■□□□□ 0.36
LIM2P55344 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.29■□□□□ 0.36
LIM2P55344 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.29■□□□□ 0.36
LIM2P55344 HYMAI.1-201ENST00000620949 238 ntBASIC17.29■□□□□ 0.36
LIM2P55344 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.29■□□□□ 0.36
LIM2P55344 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIM2P55344 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.29■□□□□ 0.36
LIM2P55344 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.29■□□□□ 0.36
LIM2P55344 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.29■□□□□ 0.36
LIM2P55344 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
LIM2P55344 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIM2P55344 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIM2P55344 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIM2P55344 AC067852.2-201ENST00000590513 2313 ntBASIC17.29■□□□□ 0.36
LIM2P55344 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
LIM2P55344 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.28■□□□□ 0.36
LIM2P55344 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.28■□□□□ 0.36
LIM2P55344 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
LIM2P55344 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.28■□□□□ 0.36
LIM2P55344 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 AC135776.1-201ENST00000319817 2481 ntBASIC17.28■□□□□ 0.36
LIM2P55344 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
LIM2P55344 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.28■□□□□ 0.36
LIM2P55344 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
LIM2P55344 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
LIM2P55344 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
LIM2P55344 HBZP1-201ENST00000354915 429 ntBASIC17.28■□□□□ 0.36
LIM2P55344 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.28■□□□□ 0.36
LIM2P55344 HLA-F-220ENST00000434407 884 ntBASIC17.28■□□□□ 0.36
LIM2P55344 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.28■□□□□ 0.36
LIM2P55344 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.28■□□□□ 0.36
LIM2P55344 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LIM2P55344 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.28■□□□□ 0.36
LIM2P55344 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.28■□□□□ 0.36
LIM2P55344 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.28■□□□□ 0.36
LIM2P55344 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.28■□□□□ 0.36
LIM2P55344 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LIM2P55344 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.28■□□□□ 0.36
LIM2P55344 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIM2P55344 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.27■□□□□ 0.36
LIM2P55344 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIM2P55344 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.27■□□□□ 0.36
LIM2P55344 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIM2P55344 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIM2P55344 AC093677.2-201ENST00000600169 1863 ntBASIC17.27■□□□□ 0.36
LIM2P55344 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIM2P55344 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIM2P55344 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIM2P55344 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIM2P55344 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIM2P55344 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIM2P55344 AL671277.2-201ENST00000458060 996 ntBASIC17.27■□□□□ 0.36
LIM2P55344 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIM2P55344 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIM2P55344 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
LIM2P55344 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIM2P55344 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.27■□□□□ 0.36
LIM2P55344 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
LIM2P55344 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIM2P55344 LINC01311-201ENST00000565162 1445 ntBASIC17.27■□□□□ 0.35
LIM2P55344 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LIM2P55344 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.27■□□□□ 0.35
LIM2P55344 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIM2P55344 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
LIM2P55344 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.27■□□□□ 0.35
LIM2P55344 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.27■□□□□ 0.35
LIM2P55344 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.27■□□□□ 0.35
LIM2P55344 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIM2P55344 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIM2P55344 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.27■□□□□ 0.35
LIM2P55344 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms