Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
CDH11P55287 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH11P55287 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH11P55287 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.72■□□□□ 0.27
CDH11P55287 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
CDH11P55287 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CDH11P55287 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.72■□□□□ 0.27
CDH11P55287 KRT8P11-201ENST00000409686 1436 ntBASIC16.72■□□□□ 0.27
CDH11P55287 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.72■□□□□ 0.27
CDH11P55287 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH11P55287 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CDH11P55287 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CDH11P55287 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CDH11P55287 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.72■□□□□ 0.27
CDH11P55287 CRYGFP-201ENST00000418459 633 ntBASIC16.72■□□□□ 0.27
CDH11P55287 AC004951.3-201ENST00000418645 1148 ntBASIC16.72■□□□□ 0.27
CDH11P55287 SLC25A6P5-201ENST00000435663 894 ntBASIC16.72■□□□□ 0.27
CDH11P55287 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.72■□□□□ 0.27
CDH11P55287 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
CDH11P55287 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.72■□□□□ 0.27
CDH11P55287 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH11P55287 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH11P55287 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CDH11P55287 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH11P55287 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH11P55287 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH11P55287 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.72■□□□□ 0.27
CDH11P55287 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH11P55287 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CDH11P55287 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.72■□□□□ 0.27
CDH11P55287 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH11P55287 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH11P55287 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CDH11P55287 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CDH11P55287 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CDH11P55287 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDH11P55287 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CDH11P55287 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH11P55287 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.71■□□□□ 0.27
CDH11P55287 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDH11P55287 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH11P55287 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH11P55287 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH11P55287 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.71■□□□□ 0.27
CDH11P55287 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.71■□□□□ 0.27
CDH11P55287 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDH11P55287 SLC25A1P4-201ENST00000567977 778 ntBASIC16.71■□□□□ 0.27
CDH11P55287 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
CDH11P55287 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC16.71■□□□□ 0.27
CDH11P55287 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH11P55287 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDH11P55287 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.71■□□□□ 0.27
CDH11P55287 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.71■□□□□ 0.27
CDH11P55287 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC16.71■□□□□ 0.27
CDH11P55287 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
CDH11P55287 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.26
CDH11P55287 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.26
CDH11P55287 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDH11P55287 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.7■□□□□ 0.26
CDH11P55287 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDH11P55287 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.7■□□□□ 0.26
CDH11P55287 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH11P55287 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CDH11P55287 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CDH11P55287 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH11P55287 AC008556.1-201ENST00000610908 2040 ntBASIC16.7■□□□□ 0.26
CDH11P55287 REXO1L9P-201ENST00000604264 2108 ntBASIC16.7■□□□□ 0.26
CDH11P55287 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH11P55287 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH11P55287 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CDH11P55287 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDH11P55287 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH11P55287 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CDH11P55287 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
CDH11P55287 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDH11P55287 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH11P55287 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH11P55287 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH11P55287 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH11P55287 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH11P55287 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH11P55287 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
CDH11P55287 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH11P55287 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH11P55287 AC113347.1-201ENST00000413321 391 ntBASIC16.7■□□□□ 0.26
CDH11P55287 FAM207BP-201ENST00000447172 505 ntBASIC16.7■□□□□ 0.26
CDH11P55287 PRSS44-201ENST00000515154 1146 ntBASIC16.7■□□□□ 0.26
CDH11P55287 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC16.7■□□□□ 0.26
CDH11P55287 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.7■□□□□ 0.26
CDH11P55287 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CDH11P55287 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH11P55287 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.7■□□□□ 0.26
CDH11P55287 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH11P55287 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH11P55287 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CDH11P55287 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CDH11P55287 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
CDH11P55287 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH11P55287 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
CDH11P55287 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms