Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP11P51784 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP11P51784 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP11P51784 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.56■□□□□ 0.88
USP11P51784 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP11P51784 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP11P51784 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP11P51784 TSPY12P-201ENST00000421279 868 ntBASIC20.56■□□□□ 0.88
USP11P51784 KRT18P65-201ENST00000439811 1286 ntBASIC20.56■□□□□ 0.88
USP11P51784 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.56■□□□□ 0.88
USP11P51784 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.56■□□□□ 0.88
USP11P51784 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.56■□□□□ 0.88
USP11P51784 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.56■□□□□ 0.88
USP11P51784 AC009154.2-201ENST00000621177 724 ntBASIC20.56■□□□□ 0.88
USP11P51784 AC132938.6-201ENST00000623828 1655 ntBASIC20.56■□□□□ 0.88
USP11P51784 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
USP11P51784 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP11P51784 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP11P51784 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP11P51784 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP11P51784 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP11P51784 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP11P51784 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP11P51784 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
USP11P51784 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP11P51784 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP11P51784 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
USP11P51784 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP11P51784 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.55■□□□□ 0.88
USP11P51784 ATP5G2P1-201ENST00000433580 426 ntBASIC20.55■□□□□ 0.88
USP11P51784 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
USP11P51784 DUTP2-201ENST00000519164 463 ntBASIC20.55■□□□□ 0.88
USP11P51784 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.55■□□□□ 0.88
USP11P51784 NPAP1P7-201ENST00000613027 823 ntBASIC20.55■□□□□ 0.88
USP11P51784 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.55■□□□□ 0.88
USP11P51784 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
USP11P51784 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP11P51784 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
USP11P51784 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP11P51784 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
USP11P51784 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
USP11P51784 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP11P51784 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP11P51784 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP11P51784 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.55■□□□□ 0.88
USP11P51784 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP11P51784 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.55■□□□□ 0.88
USP11P51784 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.55■□□□□ 0.88
USP11P51784 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
USP11P51784 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.54■□□□□ 0.88
USP11P51784 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
USP11P51784 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
USP11P51784 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.54■□□□□ 0.88
USP11P51784 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP11P51784 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
USP11P51784 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.54■□□□□ 0.88
USP11P51784 AP002383.4-201ENST00000442518 975 ntBASIC20.54■□□□□ 0.88
USP11P51784 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP11P51784 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP11P51784 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP11P51784 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP11P51784 IGHV3-41-201ENST00000613121 348 ntBASIC20.54■□□□□ 0.88
USP11P51784 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.54■□□□□ 0.88
USP11P51784 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.54■□□□□ 0.88
USP11P51784 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP11P51784 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.54■□□□□ 0.88
USP11P51784 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP11P51784 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP11P51784 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP11P51784 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP11P51784 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP11P51784 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
USP11P51784 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP11P51784 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.54■□□□□ 0.88
USP11P51784 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.54■□□□□ 0.88
USP11P51784 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP11P51784 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
USP11P51784 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP11P51784 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
USP11P51784 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC20.53■□□□□ 0.88
USP11P51784 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP11P51784 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
USP11P51784 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
USP11P51784 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP11P51784 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP11P51784 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP11P51784 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
USP11P51784 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.53■□□□□ 0.88
USP11P51784 AC068472.1-201ENST00000474589 881 ntBASIC20.53■□□□□ 0.88
USP11P51784 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP11P51784 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.53■□□□□ 0.88
USP11P51784 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
USP11P51784 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.53■□□□□ 0.88
USP11P51784 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
USP11P51784 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP11P51784 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP11P51784 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP11P51784 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USP11P51784 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP11P51784 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms