Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SOX3P41225 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.17■□□□□ 0.34
SOX3P41225 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.17■□□□□ 0.34
SOX3P41225 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.17■□□□□ 0.34
SOX3P41225 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.16■□□□□ 0.34
SOX3P41225 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SOX3P41225 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.16■□□□□ 0.34
SOX3P41225 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
SOX3P41225 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
SOX3P41225 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
SOX3P41225 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
SOX3P41225 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SOX3P41225 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.16■□□□□ 0.34
SOX3P41225 STARP1-201ENST00000397973 869 ntBASIC17.16■□□□□ 0.34
SOX3P41225 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 AL031133.1-201ENST00000406807 723 ntBASIC17.16■□□□□ 0.34
SOX3P41225 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 SPDYE15P-201ENST00000424157 909 ntBASIC17.16■□□□□ 0.34
SOX3P41225 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.16■□□□□ 0.34
SOX3P41225 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.16■□□□□ 0.34
SOX3P41225 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SOX3P41225 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
SOX3P41225 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SOX3P41225 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.16■□□□□ 0.34
SOX3P41225 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SOX3P41225 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SOX3P41225 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.16■□□□□ 0.34
SOX3P41225 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SOX3P41225 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.15■□□□□ 0.34
SOX3P41225 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.15■□□□□ 0.34
SOX3P41225 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.15■□□□□ 0.34
SOX3P41225 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SOX3P41225 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
SOX3P41225 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.15■□□□□ 0.34
SOX3P41225 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
SOX3P41225 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 AC112907.2-201ENST00000448639 330 ntBASIC17.15■□□□□ 0.34
SOX3P41225 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.15■□□□□ 0.34
SOX3P41225 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 AL671277.2-201ENST00000458060 996 ntBASIC17.15■□□□□ 0.34
SOX3P41225 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 SEC1P-202ENST00000473944 940 ntBASIC17.15■□□□□ 0.34
SOX3P41225 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.15■□□□□ 0.34
SOX3P41225 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.15■□□□□ 0.34
SOX3P41225 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
SOX3P41225 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.15■□□□□ 0.34
SOX3P41225 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.15■□□□□ 0.34
SOX3P41225 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.15■□□□□ 0.34
SOX3P41225 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.15■□□□□ 0.34
SOX3P41225 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SOX3P41225 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.15■□□□□ 0.34
SOX3P41225 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.15■□□□□ 0.34
SOX3P41225 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.15■□□□□ 0.34
SOX3P41225 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.15■□□□□ 0.34
SOX3P41225 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SOX3P41225 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
SOX3P41225 AC034236.2-201ENST00000606662 1610 ntBASIC17.14■□□□□ 0.33
SOX3P41225 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SOX3P41225 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SOX3P41225 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SOX3P41225 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SOX3P41225 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms