Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A5P29400 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A5P29400 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC21.78■■□□□ 1.08
COL4A5P29400 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A5P29400 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A5P29400 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A5P29400 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A5P29400 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
COL4A5P29400 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.78■■□□□ 1.08
COL4A5P29400 AC132938.6-201ENST00000623828 1655 ntBASIC21.78■■□□□ 1.08
COL4A5P29400 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.78■■□□□ 1.08
COL4A5P29400 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.78■■□□□ 1.08
COL4A5P29400 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A5P29400 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A5P29400 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A5P29400 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC21.78■■□□□ 1.08
COL4A5P29400 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC21.78■■□□□ 1.08
COL4A5P29400 MIR4469-201ENST00000583919 79 ntBASIC21.78■■□□□ 1.08
COL4A5P29400 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC21.78■■□□□ 1.08
COL4A5P29400 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.78■■□□□ 1.08
COL4A5P29400 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A5P29400 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A5P29400 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.77■■□□□ 1.08
COL4A5P29400 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A5P29400 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
COL4A5P29400 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.77■■□□□ 1.08
COL4A5P29400 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC21.77■■□□□ 1.08
COL4A5P29400 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A5P29400 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC21.77■■□□□ 1.08
COL4A5P29400 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC21.77■■□□□ 1.08
COL4A5P29400 CFL1-212ENST00000531413 636 ntTSL 3 BASIC21.77■■□□□ 1.08
COL4A5P29400 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC21.77■■□□□ 1.08
COL4A5P29400 AL022326.1-202ENST00000641533 845 ntBASIC21.77■■□□□ 1.08
COL4A5P29400 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC21.77■■□□□ 1.08
COL4A5P29400 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A5P29400 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A5P29400 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A5P29400 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A5P29400 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A5P29400 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A5P29400 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
COL4A5P29400 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A5P29400 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A5P29400 AC018845.2-201ENST00000568326 409 ntBASIC21.76■■□□□ 1.07
COL4A5P29400 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
COL4A5P29400 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC21.76■■□□□ 1.07
COL4A5P29400 AL513190.1-201ENST00000621254 727 ntBASIC21.76■■□□□ 1.07
COL4A5P29400 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC21.76■■□□□ 1.07
COL4A5P29400 AC002310.6-201ENST00000624451 1377 ntBASIC21.76■■□□□ 1.07
COL4A5P29400 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.76■■□□□ 1.07
COL4A5P29400 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A5P29400 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A5P29400 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A5P29400 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.76■■□□□ 1.07
COL4A5P29400 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A5P29400 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.76■■□□□ 1.07
COL4A5P29400 CALY-203ENST00000368558 825 ntTSL 5 BASIC21.75■■□□□ 1.07
COL4A5P29400 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC21.75■■□□□ 1.07
COL4A5P29400 AC136632.2-201ENST00000512891 861 ntBASIC21.75■■□□□ 1.07
COL4A5P29400 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC21.75■■□□□ 1.07
COL4A5P29400 AD001527.2-201ENST00000622994 785 ntBASIC21.75■■□□□ 1.07
COL4A5P29400 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A5P29400 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A5P29400 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A5P29400 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A5P29400 SIGLEC16-201ENST00000599858 1437 ntBASIC21.75■■□□□ 1.07
COL4A5P29400 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A5P29400 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COL4A5P29400 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A5P29400 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A5P29400 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
COL4A5P29400 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A5P29400 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COL4A5P29400 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COL4A5P29400 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A5P29400 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC21.75■■□□□ 1.07
COL4A5P29400 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC21.75■■□□□ 1.07
COL4A5P29400 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A5P29400 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A5P29400 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A5P29400 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A5P29400 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
COL4A5P29400 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A5P29400 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A5P29400 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A5P29400 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A5P29400 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC21.74■■□□□ 1.07
COL4A5P29400 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A5P29400 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC21.74■■□□□ 1.07
COL4A5P29400 SRP19-202ENST00000445150 833 ntTSL 2 BASIC21.74■■□□□ 1.07
COL4A5P29400 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A5P29400 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC21.74■■□□□ 1.07
COL4A5P29400 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC21.74■■□□□ 1.07
COL4A5P29400 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.74■■□□□ 1.07
COL4A5P29400 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A5P29400 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC21.74■■□□□ 1.07
COL4A5P29400 AC006557.2-201ENST00000592985 1240 ntBASIC21.74■■□□□ 1.07
COL4A5P29400 AL078644.1-201ENST00000609881 752 ntBASIC21.74■■□□□ 1.07
COL4A5P29400 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC21.74■■□□□ 1.07
COL4A5P29400 MIR1199-201ENST00000621445 119 ntBASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms