Protein–RNA interactions for Protein: P20036

HLA-DPA1, HLA class II histocompatibility antigen, DP alpha 1 chain, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1P20036 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 RNF152P1-201ENST00000397754 604 ntBASIC18.4■□□□□ 0.54
HLA-DPA1P20036 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DPA1P20036 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
HLA-DPA1P20036 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.54
HLA-DPA1P20036 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
HLA-DPA1P20036 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 AK4P3-201ENST00000418260 669 ntBASIC18.39■□□□□ 0.53
HLA-DPA1P20036 TSPY5P-201ENST00000426936 936 ntBASIC18.39■□□□□ 0.53
HLA-DPA1P20036 HOMER2P1-201ENST00000455653 964 ntBASIC18.39■□□□□ 0.53
HLA-DPA1P20036 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 AL096828.2-201ENST00000567259 1965 ntBASIC18.39■□□□□ 0.53
HLA-DPA1P20036 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DPA1P20036 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 SPDYE15P-201ENST00000424157 909 ntBASIC18.38■□□□□ 0.53
HLA-DPA1P20036 TMPOP1-202ENST00000424642 1267 ntBASIC18.38■□□□□ 0.53
HLA-DPA1P20036 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 RN7SL850P-201ENST00000579959 291 ntBASIC18.38■□□□□ 0.53
HLA-DPA1P20036 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 PKD1P1-201ENST00000458669 6805 ntBASIC18.38■□□□□ 0.53
HLA-DPA1P20036 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DPA1P20036 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DPA1P20036 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DPA1P20036 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DPA1P20036 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
HLA-DPA1P20036 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.37■□□□□ 0.53
HLA-DPA1P20036 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DPA1P20036 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DPA1P20036 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.37■□□□□ 0.53
HLA-DPA1P20036 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.37■□□□□ 0.53
HLA-DPA1P20036 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DPA1P20036 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.37■□□□□ 0.53
HLA-DPA1P20036 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DPA1P20036 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms