Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MMP3P08254 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
MMP3P08254 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MMP3P08254 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.12■□□□□ 0.81
MMP3P08254 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
MMP3P08254 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.11■□□□□ 0.81
MMP3P08254 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
MMP3P08254 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC20.11■□□□□ 0.81
MMP3P08254 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
MMP3P08254 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.11■□□□□ 0.81
MMP3P08254 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MMP3P08254 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MMP3P08254 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MMP3P08254 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MMP3P08254 ABCD1P5-201ENST00000445663 754 ntBASIC20.11■□□□□ 0.81
MMP3P08254 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
MMP3P08254 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20.11■□□□□ 0.81
MMP3P08254 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.11■□□□□ 0.81
MMP3P08254 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.11■□□□□ 0.81
MMP3P08254 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC20.11■□□□□ 0.81
MMP3P08254 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.11■□□□□ 0.81
MMP3P08254 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
MMP3P08254 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.11■□□□□ 0.81
MMP3P08254 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MMP3P08254 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
MMP3P08254 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MMP3P08254 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MMP3P08254 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.11■□□□□ 0.81
MMP3P08254 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.11■□□□□ 0.81
MMP3P08254 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MMP3P08254 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC20.11■□□□□ 0.81
MMP3P08254 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.1■□□□□ 0.81
MMP3P08254 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
MMP3P08254 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.1■□□□□ 0.81
MMP3P08254 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MMP3P08254 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
MMP3P08254 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MMP3P08254 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.1■□□□□ 0.81
MMP3P08254 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MMP3P08254 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC20.1■□□□□ 0.81
MMP3P08254 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
MMP3P08254 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MMP3P08254 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
MMP3P08254 GMCL1P1-201ENST00000463439 1581 ntBASIC20.1■□□□□ 0.81
MMP3P08254 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MMP3P08254 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
MMP3P08254 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.1■□□□□ 0.81
MMP3P08254 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC20.1■□□□□ 0.81
MMP3P08254 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC20.1■□□□□ 0.81
MMP3P08254 AC139887.3-201ENST00000568585 713 ntBASIC20.1■□□□□ 0.81
MMP3P08254 LITAF-211ENST00000572255 516 ntTSL 4 BASIC20.1■□□□□ 0.81
MMP3P08254 PAM16-208ENST00000573553 722 ntTSL 2 BASIC20.1■□□□□ 0.81
MMP3P08254 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
MMP3P08254 PRKN-208ENST00000610470 531 ntTSL 2 BASIC20.1■□□□□ 0.81
MMP3P08254 PRKN-209ENST00000612485 225 ntTSL 5 BASIC20.1■□□□□ 0.81
MMP3P08254 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MMP3P08254 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.1■□□□□ 0.81
MMP3P08254 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MMP3P08254 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MMP3P08254 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MMP3P08254 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MMP3P08254 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
MMP3P08254 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MMP3P08254 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MMP3P08254 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MMP3P08254 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC20.09■□□□□ 0.81
MMP3P08254 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
MMP3P08254 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MMP3P08254 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
MMP3P08254 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
MMP3P08254 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
MMP3P08254 SART3-203ENST00000546611 1184 ntBASIC20.09■□□□□ 0.81
MMP3P08254 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MMP3P08254 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MMP3P08254 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
MMP3P08254 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.09■□□□□ 0.81
MMP3P08254 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MMP3P08254 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MMP3P08254 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC20.08■□□□□ 0.81
MMP3P08254 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
MMP3P08254 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
MMP3P08254 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.08■□□□□ 0.81
MMP3P08254 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC20.08■□□□□ 0.81
MMP3P08254 AC132938.6-201ENST00000623828 1655 ntBASIC20.08■□□□□ 0.81
MMP3P08254 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.08■□□□□ 0.81
MMP3P08254 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
MMP3P08254 AC021087.4-201ENST00000563761 564 ntBASIC20.08■□□□□ 0.81
MMP3P08254 AC106730.1-201ENST00000566722 1090 ntBASIC20.08■□□□□ 0.81
MMP3P08254 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20.08■□□□□ 0.81
MMP3P08254 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC20.08■□□□□ 0.81
MMP3P08254 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
MMP3P08254 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
MMP3P08254 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MMP3P08254 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.07■□□□□ 0.8
MMP3P08254 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC20.07■□□□□ 0.8
MMP3P08254 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MMP3P08254 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
MMP3P08254 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
MMP3P08254 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MMP3P08254 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms