Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.63■□□□□ 0.41
LDLRP01130 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.63■□□□□ 0.41
LDLRP01130 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.63■□□□□ 0.41
LDLRP01130 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.63■□□□□ 0.41
LDLRP01130 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDLRP01130 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.63■□□□□ 0.41
LDLRP01130 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDLRP01130 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.63■□□□□ 0.41
LDLRP01130 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LDLRP01130 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDLRP01130 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDLRP01130 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LDLRP01130 AC134043.2-201ENST00000624206 2238 ntBASIC17.63■□□□□ 0.41
LDLRP01130 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LDLRP01130 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
LDLRP01130 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LDLRP01130 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
LDLRP01130 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDLRP01130 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDLRP01130 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.63■□□□□ 0.41
LDLRP01130 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.63■□□□□ 0.41
LDLRP01130 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LDLRP01130 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LDLRP01130 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LDLRP01130 AP006587.1-201ENST00000534129 1502 ntBASIC17.62■□□□□ 0.41
LDLRP01130 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LDLRP01130 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.62■□□□□ 0.41
LDLRP01130 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.62■□□□□ 0.41
LDLRP01130 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LDLRP01130 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LDLRP01130 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
LDLRP01130 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
LDLRP01130 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
LDLRP01130 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LDLRP01130 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.62■□□□□ 0.41
LDLRP01130 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LDLRP01130 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.62■□□□□ 0.41
LDLRP01130 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LDLRP01130 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.62■□□□□ 0.41
LDLRP01130 AC117947.1-201ENST00000427448 529 ntBASIC17.62■□□□□ 0.41
LDLRP01130 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
LDLRP01130 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.62■□□□□ 0.41
LDLRP01130 FAM87A-204ENST00000613235 858 ntBASIC17.62■□□□□ 0.41
LDLRP01130 AP000550.4-202ENST00000639755 178 ntBASIC17.62■□□□□ 0.41
LDLRP01130 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.62■□□□□ 0.41
LDLRP01130 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LDLRP01130 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
LDLRP01130 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.62■□□□□ 0.41
LDLRP01130 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
LDLRP01130 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
LDLRP01130 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LDLRP01130 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
LDLRP01130 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.62■□□□□ 0.41
LDLRP01130 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LDLRP01130 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDLRP01130 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
LDLRP01130 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.61■□□□□ 0.41
LDLRP01130 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.61■□□□□ 0.41
LDLRP01130 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LDLRP01130 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDLRP01130 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDLRP01130 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LDLRP01130 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.61■□□□□ 0.41
LDLRP01130 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
LDLRP01130 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDLRP01130 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.61■□□□□ 0.41
LDLRP01130 AC026396.1-201ENST00000419388 421 ntBASIC17.61■□□□□ 0.41
LDLRP01130 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.61■□□□□ 0.41
LDLRP01130 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.61■□□□□ 0.41
LDLRP01130 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.61■□□□□ 0.41
LDLRP01130 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.61■□□□□ 0.41
LDLRP01130 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.61■□□□□ 0.41
LDLRP01130 AC026271.3-201ENST00000571884 352 ntBASIC17.61■□□□□ 0.41
LDLRP01130 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.61■□□□□ 0.41
LDLRP01130 DGCR10-201ENST00000609839 495 ntBASIC17.61■□□□□ 0.41
LDLRP01130 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.61■□□□□ 0.41
LDLRP01130 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDLRP01130 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.61■□□□□ 0.41
LDLRP01130 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.61■□□□□ 0.41
LDLRP01130 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDLRP01130 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.61■□□□□ 0.41
LDLRP01130 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDLRP01130 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDLRP01130 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LDLRP01130 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
LDLRP01130 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDLRP01130 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDLRP01130 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
LDLRP01130 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
LDLRP01130 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.6■□□□□ 0.41
LDLRP01130 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
LDLRP01130 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.6■□□□□ 0.41
LDLRP01130 AC091390.4-202ENST00000476426 537 ntBASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms