Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS4BO75351 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS4BO75351 AC063952.2-201ENST00000498792 1227 ntBASIC17.9■□□□□ 0.46
VPS4BO75351 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS4BO75351 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.9■□□□□ 0.46
VPS4BO75351 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4BO75351 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4BO75351 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4BO75351 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
VPS4BO75351 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.9■□□□□ 0.46
VPS4BO75351 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4BO75351 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4BO75351 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4BO75351 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4BO75351 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.9■□□□□ 0.46
VPS4BO75351 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.89■□□□□ 0.46
VPS4BO75351 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.89■□□□□ 0.46
VPS4BO75351 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
VPS4BO75351 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.89■□□□□ 0.46
VPS4BO75351 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
VPS4BO75351 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.89■□□□□ 0.45
VPS4BO75351 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.89■□□□□ 0.45
VPS4BO75351 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.89■□□□□ 0.45
VPS4BO75351 KRT18P48-201ENST00000434763 852 ntBASIC17.89■□□□□ 0.45
VPS4BO75351 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.89■□□□□ 0.45
VPS4BO75351 AP005242.2-201ENST00000580065 1175 ntBASIC17.89■□□□□ 0.45
VPS4BO75351 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.89■□□□□ 0.45
VPS4BO75351 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
VPS4BO75351 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 AC011298.2-201ENST00000617989 482 ntBASIC17.89■□□□□ 0.45
VPS4BO75351 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
VPS4BO75351 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.89■□□□□ 0.45
VPS4BO75351 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
VPS4BO75351 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS4BO75351 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.88■□□□□ 0.45
VPS4BO75351 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.88■□□□□ 0.45
VPS4BO75351 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.88■□□□□ 0.45
VPS4BO75351 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.88■□□□□ 0.45
VPS4BO75351 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.88■□□□□ 0.45
VPS4BO75351 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.88■□□□□ 0.45
VPS4BO75351 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.88■□□□□ 0.45
VPS4BO75351 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.88■□□□□ 0.45
VPS4BO75351 DGCR10-201ENST00000609839 495 ntBASIC17.88■□□□□ 0.45
VPS4BO75351 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.88■□□□□ 0.45
VPS4BO75351 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS4BO75351 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
VPS4BO75351 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.87■□□□□ 0.45
VPS4BO75351 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS4BO75351 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
VPS4BO75351 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS4BO75351 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
VPS4BO75351 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.87■□□□□ 0.45
VPS4BO75351 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS4BO75351 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.87■□□□□ 0.45
VPS4BO75351 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS4BO75351 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
VPS4BO75351 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
VPS4BO75351 FAM207BP-201ENST00000447172 505 ntBASIC17.87■□□□□ 0.45
VPS4BO75351 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS4BO75351 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.87■□□□□ 0.45
VPS4BO75351 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS4BO75351 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.87■□□□□ 0.45
VPS4BO75351 AC130371.2-201ENST00000619443 611 ntBASIC17.87■□□□□ 0.45
VPS4BO75351 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.87■□□□□ 0.45
VPS4BO75351 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS4BO75351 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS4BO75351 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms