Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
NPHP4O75161 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC25.5■■□□□ 1.67
NPHP4O75161 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
NPHP4O75161 ARTN-206ENST00000472435 402 ntTSL 3 BASIC25.5■■□□□ 1.67
NPHP4O75161 CCDC74BP1-201ENST00000508880 1123 ntBASIC25.5■■□□□ 1.67
NPHP4O75161 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC25.5■■□□□ 1.67
NPHP4O75161 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC25.5■■□□□ 1.67
NPHP4O75161 AC008667.4-201ENST00000607370 168 ntBASIC25.5■■□□□ 1.67
NPHP4O75161 CITED2-204ENST00000618718 901 ntTSL 2 BASIC25.5■■□□□ 1.67
NPHP4O75161 AL513210.1-201ENST00000629608 234 ntBASIC25.5■■□□□ 1.67
NPHP4O75161 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC25.5■■□□□ 1.67
NPHP4O75161 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
NPHP4O75161 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
NPHP4O75161 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
NPHP4O75161 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC25.5■■□□□ 1.67
NPHP4O75161 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC25.5■■□□□ 1.67
NPHP4O75161 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
NPHP4O75161 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP4O75161 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP4O75161 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC25.49■■□□□ 1.67
NPHP4O75161 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC25.49■■□□□ 1.67
NPHP4O75161 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP4O75161 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC25.49■■□□□ 1.67
NPHP4O75161 AC190387.1-201ENST00000551683 408 ntBASIC25.49■■□□□ 1.67
NPHP4O75161 CIPC-205ENST00000555437 566 ntTSL 3 BASIC25.49■■□□□ 1.67
NPHP4O75161 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
NPHP4O75161 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP4O75161 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP4O75161 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
NPHP4O75161 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP4O75161 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
NPHP4O75161 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP4O75161 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP4O75161 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP4O75161 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC25.48■■□□□ 1.67
NPHP4O75161 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC25.48■■□□□ 1.67
NPHP4O75161 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC25.48■■□□□ 1.67
NPHP4O75161 AC005034.1-201ENST00000426657 489 ntBASIC25.48■■□□□ 1.67
NPHP4O75161 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC25.48■■□□□ 1.67
NPHP4O75161 FAM58CP-201ENST00000435741 640 ntBASIC25.48■■□□□ 1.67
NPHP4O75161 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP4O75161 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
NPHP4O75161 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC25.48■■□□□ 1.67
NPHP4O75161 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC25.48■■□□□ 1.67
NPHP4O75161 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC25.48■■□□□ 1.67
NPHP4O75161 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC25.48■■□□□ 1.67
NPHP4O75161 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP4O75161 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC25.48■■□□□ 1.67
NPHP4O75161 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC25.48■■□□□ 1.67
NPHP4O75161 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP4O75161 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP4O75161 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP4O75161 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP4O75161 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP4O75161 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC25.47■■□□□ 1.67
NPHP4O75161 CBR1-202ENST00000399191 838 ntTSL 3 BASIC25.47■■□□□ 1.67
NPHP4O75161 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC25.47■■□□□ 1.67
NPHP4O75161 ACTG1P14-201ENST00000446382 1122 ntBASIC25.47■■□□□ 1.67
NPHP4O75161 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC25.47■■□□□ 1.67
NPHP4O75161 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC25.47■■□□□ 1.67
NPHP4O75161 AC004449.1-201ENST00000564240 433 ntBASIC25.47■■□□□ 1.67
NPHP4O75161 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC25.47■■□□□ 1.67
NPHP4O75161 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC25.47■■□□□ 1.67
NPHP4O75161 Z92544.3-201ENST00000624747 417 ntBASIC25.47■■□□□ 1.67
NPHP4O75161 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC25.47■■□□□ 1.67
NPHP4O75161 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP4O75161 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
NPHP4O75161 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP4O75161 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP4O75161 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP4O75161 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC25.46■■□□□ 1.67
NPHP4O75161 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
NPHP4O75161 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC25.46■■□□□ 1.67
NPHP4O75161 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC25.46■■□□□ 1.67
NPHP4O75161 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC25.46■■□□□ 1.67
NPHP4O75161 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC25.46■■□□□ 1.67
NPHP4O75161 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC25.46■■□□□ 1.67
NPHP4O75161 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC25.46■■□□□ 1.67
NPHP4O75161 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC25.46■■□□□ 1.67
NPHP4O75161 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC25.46■■□□□ 1.67
NPHP4O75161 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
NPHP4O75161 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
NPHP4O75161 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
NPHP4O75161 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC25.46■■□□□ 1.67
NPHP4O75161 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
NPHP4O75161 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
NPHP4O75161 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
NPHP4O75161 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC25.46■■□□□ 1.67
NPHP4O75161 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
NPHP4O75161 RPS15P9-201ENST00000494093 319 ntBASIC25.46■■□□□ 1.67
NPHP4O75161 KRT19P2-202ENST00000557173 1012 ntBASIC25.46■■□□□ 1.67
NPHP4O75161 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC25.46■■□□□ 1.67
NPHP4O75161 AC004790.2-201ENST00000623588 572 ntBASIC25.46■■□□□ 1.67
NPHP4O75161 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
NPHP4O75161 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
NPHP4O75161 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
NPHP4O75161 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC25.45■■□□□ 1.67
NPHP4O75161 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
NPHP4O75161 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
NPHP4O75161 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC25.45■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms