Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 EMBP1-201ENST00000458200 901 ntBASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CTDP1Q9Y5B0 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CTDP1Q9Y5B0 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CTDP1Q9Y5B0 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CTDP1Q9Y5B0 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC21.08■□□□□ 0.96
CTDP1Q9Y5B0 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21.08■□□□□ 0.96
CTDP1Q9Y5B0 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 TSPY12P-201ENST00000421279 868 ntBASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 AC246785.2-201ENST00000432512 513 ntBASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 NSUN5P1-202ENST00000421140 1535 ntBASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 NSUN5P2-203ENST00000457352 1529 ntBASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CTDP1Q9Y5B0 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 DFFB-203ENST00000341385 572 ntTSL 5 BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 NUS1P2-201ENST00000417358 873 ntBASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CTDP1Q9Y5B0 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC21.05■□□□□ 0.96
CTDP1Q9Y5B0 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC21.05■□□□□ 0.96
CTDP1Q9Y5B0 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CTDP1Q9Y5B0 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
CTDP1Q9Y5B0 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CTDP1Q9Y5B0 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CTDP1Q9Y5B0 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.05■□□□□ 0.96
CTDP1Q9Y5B0 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CTDP1Q9Y5B0 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CTDP1Q9Y5B0 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms