Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
COL20A1Q9P218 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.57■□□□□ 0.88
COL20A1Q9P218 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.57■□□□□ 0.88
COL20A1Q9P218 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.57■□□□□ 0.88
COL20A1Q9P218 RCN1P2-201ENST00000398357 915 ntBASIC20.57■□□□□ 0.88
COL20A1Q9P218 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 AF238378.1-201ENST00000526806 358 ntBASIC20.57■□□□□ 0.88
COL20A1Q9P218 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 MIR5100-201ENST00000579544 119 ntBASIC20.57■□□□□ 0.88
COL20A1Q9P218 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC20.57■□□□□ 0.88
COL20A1Q9P218 AC114341.1-201ENST00000618070 349 ntBASIC20.57■□□□□ 0.88
COL20A1Q9P218 REXO1L6P-202ENST00000619970 1078 ntBASIC20.57■□□□□ 0.88
COL20A1Q9P218 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
COL20A1Q9P218 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
COL20A1Q9P218 PHGDH-209ENST00000641074 1780 ntBASIC20.57■□□□□ 0.88
COL20A1Q9P218 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL20A1Q9P218 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
COL20A1Q9P218 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.56■□□□□ 0.88
COL20A1Q9P218 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL20A1Q9P218 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
COL20A1Q9P218 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL20A1Q9P218 WIZP1-201ENST00000531444 2299 ntBASIC20.56■□□□□ 0.88
COL20A1Q9P218 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL20A1Q9P218 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.56■□□□□ 0.88
COL20A1Q9P218 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL20A1Q9P218 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.56■□□□□ 0.88
COL20A1Q9P218 POM121L3P-201ENST00000419331 1163 ntBASIC20.56■□□□□ 0.88
COL20A1Q9P218 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.56■□□□□ 0.88
COL20A1Q9P218 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.56■□□□□ 0.88
COL20A1Q9P218 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.56■□□□□ 0.88
COL20A1Q9P218 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.56■□□□□ 0.88
COL20A1Q9P218 AL160237.2-201ENST00000556165 472 ntBASIC20.56■□□□□ 0.88
COL20A1Q9P218 AL138831.2-201ENST00000606564 490 ntBASIC20.56■□□□□ 0.88
COL20A1Q9P218 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL20A1Q9P218 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL20A1Q9P218 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL20A1Q9P218 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
COL20A1Q9P218 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL20A1Q9P218 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL20A1Q9P218 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL20A1Q9P218 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
COL20A1Q9P218 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
COL20A1Q9P218 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
COL20A1Q9P218 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL20A1Q9P218 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.55■□□□□ 0.88
COL20A1Q9P218 TNXA-203ENST00000507684 2038 ntBASIC20.55■□□□□ 0.88
COL20A1Q9P218 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL20A1Q9P218 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL20A1Q9P218 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COL20A1Q9P218 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC20.55■□□□□ 0.88
COL20A1Q9P218 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL20A1Q9P218 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COL20A1Q9P218 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC20.55■□□□□ 0.88
COL20A1Q9P218 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.55■□□□□ 0.88
COL20A1Q9P218 AP002469.2-201ENST00000531724 424 ntBASIC20.55■□□□□ 0.88
COL20A1Q9P218 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC20.55■□□□□ 0.88
COL20A1Q9P218 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
COL20A1Q9P218 LINC01711-201ENST00000598340 967 ntBASIC20.55■□□□□ 0.88
COL20A1Q9P218 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL20A1Q9P218 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL20A1Q9P218 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC20.55■□□□□ 0.88
COL20A1Q9P218 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
COL20A1Q9P218 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
COL20A1Q9P218 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL20A1Q9P218 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL20A1Q9P218 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL20A1Q9P218 TP73-AS1-210ENST00000637775 1455 ntBASIC20.55■□□□□ 0.88
COL20A1Q9P218 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.55■□□□□ 0.88
COL20A1Q9P218 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.55■□□□□ 0.88
COL20A1Q9P218 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL20A1Q9P218 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.55■□□□□ 0.88
COL20A1Q9P218 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL20A1Q9P218 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.54■□□□□ 0.88
COL20A1Q9P218 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.54■□□□□ 0.88
COL20A1Q9P218 BX323043.1-201ENST00000641006 1765 ntBASIC20.54■□□□□ 0.88
COL20A1Q9P218 AC125634.1-201ENST00000438758 1403 ntBASIC20.54■□□□□ 0.88
COL20A1Q9P218 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
COL20A1Q9P218 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL20A1Q9P218 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL20A1Q9P218 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL20A1Q9P218 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.54■□□□□ 0.88
COL20A1Q9P218 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.54■□□□□ 0.88
COL20A1Q9P218 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC20.54■□□□□ 0.88
COL20A1Q9P218 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
COL20A1Q9P218 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
COL20A1Q9P218 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL20A1Q9P218 AL121912.1-201ENST00000603683 238 ntBASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms