Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 AL353801.3-201ENST00000609898 542 ntBASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 Z98044.1-201ENST00000632503 1764 ntBASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 CROCCP3-202ENST00000420820 1947 ntBASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 AL353692.3-201ENST00000407031 1396 ntBASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 KRT16P4-201ENST00000453883 522 ntBASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 AP002469.2-201ENST00000531724 424 ntBASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TM9SF3Q9HD45 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 VENTXP7-201ENST00000475503 772 ntBASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 AL121912.1-201ENST00000603683 238 ntBASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
TM9SF3Q9HD45 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 KRT89P-201ENST00000620027 1478 ntBASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 SLC25A6P4-201ENST00000586535 553 ntBASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 NSUN5P1-202ENST00000421140 1535 ntBASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 NSUN5P2-203ENST00000457352 1529 ntBASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms