Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 KRT89P-201ENST00000620027 1478 ntBASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 HLA-F-220ENST00000434407 884 ntBASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 KRT18P57-201ENST00000443599 1254 ntBASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCSER1Q9C0I3 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 TSPY5P-201ENST00000426936 936 ntBASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 LINC00167-201ENST00000530583 1419 ntBASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 AL136038.4-201ENST00000603606 1261 ntBASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCSER1Q9C0I3 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
CCSER1Q9C0I3 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCSER1Q9C0I3 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
CCSER1Q9C0I3 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.86
CCSER1Q9C0I3 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.39■□□□□ 0.86
CCSER1Q9C0I3 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCSER1Q9C0I3 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCSER1Q9C0I3 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
CCSER1Q9C0I3 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
CCSER1Q9C0I3 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.39■□□□□ 0.86
CCSER1Q9C0I3 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 RNF152P1-201ENST00000397754 604 ntBASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 KRT18P21-201ENST00000515767 1272 ntBASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 AC024563.2-201ENST00000603282 481 ntBASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCSER1Q9C0I3 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
CCSER1Q9C0I3 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCSER1Q9C0I3 KRT18P55-202ENST00000578578 1546 ntBASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms