Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 AC113404.2-201ENST00000507884 177 ntBASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 AP000867.3-201ENST00000524675 377 ntBASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 AC008687.5-201ENST00000593746 558 ntBASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 AL353801.3-201ENST00000609898 542 ntBASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 AL121772.3-201ENST00000610840 674 ntBASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 AL592071.1-201ENST00000611956 408 ntBASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAIPQ9BWF2 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.95■□□□□ 0.79
TRAIPQ9BWF2 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 AC246785.2-201ENST00000432512 513 ntBASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 AIRN-201ENST00000601203 4374 ntBASIC19.95■□□□□ 0.78
TRAIPQ9BWF2 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 AC004870.1-201ENST00000315132 882 ntBASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 IGHV3-47-201ENST00000425060 335 ntBASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 Z69720.1-201ENST00000601483 472 ntBASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.94■□□□□ 0.78
TRAIPQ9BWF2 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms