Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 INGX-202ENST00000489074 768 ntBASIC15.88■□□□□ 0.13
COL12A1Q99715 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.88■□□□□ 0.13
COL12A1Q99715 AC008761.3-201ENST00000624803 892 ntBASIC15.88■□□□□ 0.13
COL12A1Q99715 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL12A1Q99715 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC15.87■□□□□ 0.13
COL12A1Q99715 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL12A1Q99715 AC020907.5-201ENST00000624372 1936 ntBASIC15.87■□□□□ 0.13
COL12A1Q99715 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL12A1Q99715 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.87■□□□□ 0.13
COL12A1Q99715 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
COL12A1Q99715 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL12A1Q99715 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
COL12A1Q99715 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC15.87■□□□□ 0.13
COL12A1Q99715 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
COL12A1Q99715 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.87■□□□□ 0.13
COL12A1Q99715 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.87■□□□□ 0.13
COL12A1Q99715 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC15.87■□□□□ 0.13
COL12A1Q99715 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.87■□□□□ 0.13
COL12A1Q99715 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC15.87■□□□□ 0.13
COL12A1Q99715 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL12A1Q99715 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC15.87■□□□□ 0.13
COL12A1Q99715 AL357033.4-201ENST00000617703 1807 ntBASIC15.87■□□□□ 0.13
COL12A1Q99715 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.87■□□□□ 0.13
COL12A1Q99715 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL12A1Q99715 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
COL12A1Q99715 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC15.87■□□□□ 0.13
COL12A1Q99715 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
COL12A1Q99715 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC15.87■□□□□ 0.13
COL12A1Q99715 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL12A1Q99715 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL12A1Q99715 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
COL12A1Q99715 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL12A1Q99715 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL12A1Q99715 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL12A1Q99715 ARSEP1-201ENST00000420443 635 ntBASIC15.87■□□□□ 0.13
COL12A1Q99715 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL12A1Q99715 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL12A1Q99715 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL12A1Q99715 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL12A1Q99715 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC15.87■□□□□ 0.13
COL12A1Q99715 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC15.87■□□□□ 0.13
COL12A1Q99715 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC15.86■□□□□ 0.13
COL12A1Q99715 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL12A1Q99715 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL12A1Q99715 AC236430.1-201ENST00000402231 743 ntBASIC15.86■□□□□ 0.13
COL12A1Q99715 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL12A1Q99715 AC018845.2-201ENST00000568326 409 ntBASIC15.86■□□□□ 0.13
COL12A1Q99715 AC011467.2-201ENST00000598425 242 ntBASIC15.86■□□□□ 0.13
COL12A1Q99715 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL12A1Q99715 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL12A1Q99715 NARF-204ENST00000390006 1766 ntTSL 2 BASIC15.86■□□□□ 0.13
COL12A1Q99715 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
COL12A1Q99715 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL12A1Q99715 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL12A1Q99715 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL12A1Q99715 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.86■□□□□ 0.13
COL12A1Q99715 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.86■□□□□ 0.13
COL12A1Q99715 SDCCAG3P1-201ENST00000589292 1150 ntBASIC15.86■□□□□ 0.13
COL12A1Q99715 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.86■□□□□ 0.13
COL12A1Q99715 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC15.86■□□□□ 0.13
COL12A1Q99715 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL12A1Q99715 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC15.86■□□□□ 0.13
COL12A1Q99715 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL12A1Q99715 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL12A1Q99715 TEX21P-204ENST00000641479 1693 ntBASIC15.86■□□□□ 0.13
COL12A1Q99715 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.86■□□□□ 0.13
COL12A1Q99715 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL12A1Q99715 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL12A1Q99715 MSRA-206ENST00000521209 814 ntTSL 3 BASIC15.86■□□□□ 0.13
COL12A1Q99715 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC15.86■□□□□ 0.13
COL12A1Q99715 NAT14-202ENST00000587400 416 ntTSL 5 BASIC15.86■□□□□ 0.13
COL12A1Q99715 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL12A1Q99715 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL12A1Q99715 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC15.85■□□□□ 0.13
COL12A1Q99715 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.85■□□□□ 0.13
COL12A1Q99715 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC15.85■□□□□ 0.13
COL12A1Q99715 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL12A1Q99715 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL12A1Q99715 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL12A1Q99715 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL12A1Q99715 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
COL12A1Q99715 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.85■□□□□ 0.13
COL12A1Q99715 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL12A1Q99715 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC15.85■□□□□ 0.13
COL12A1Q99715 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
COL12A1Q99715 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC15.85■□□□□ 0.13
COL12A1Q99715 KATNBL1P6-202ENST00000562413 1466 ntBASIC15.85■□□□□ 0.13
COL12A1Q99715 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC15.85■□□□□ 0.13
COL12A1Q99715 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
COL12A1Q99715 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL12A1Q99715 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL12A1Q99715 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.85■□□□□ 0.13
COL12A1Q99715 ELK2BP-201ENST00000415014 1224 ntBASIC15.85■□□□□ 0.13
COL12A1Q99715 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL12A1Q99715 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms