Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 KRT8P7-201ENST00000533003 1432 ntBASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 STARP1-201ENST00000397973 869 ntBASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 AL354751.1-201ENST00000412768 1863 ntBASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP4CQ96CF2 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 NEFHP1-201ENST00000412845 2629 ntBASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 SPDYE13P-201ENST00000445314 798 ntBASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 HTR7P1-202ENST00000624664 4411 ntBASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
CHMP4CQ96CF2 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 IER3-202ENST00000376377 1350 ntBASIC21.73■■□□□ 1.07
CHMP4CQ96CF2 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC21.72■■□□□ 1.07
CHMP4CQ96CF2 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC21.72■■□□□ 1.07
CHMP4CQ96CF2 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CHMP4CQ96CF2 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CHMP4CQ96CF2 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CHMP4CQ96CF2 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.72■■□□□ 1.07
CHMP4CQ96CF2 ZNF444P1-201ENST00000559497 298 ntBASIC21.72■■□□□ 1.07
CHMP4CQ96CF2 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CHMP4CQ96CF2 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms