Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 LINC01126-201ENST00000623515 1646 ntBASIC19.03■□□□□ 0.64
EPHB3P54753 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.03■□□□□ 0.64
EPHB3P54753 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
EPHB3P54753 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
EPHB3P54753 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.03■□□□□ 0.64
EPHB3P54753 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
EPHB3P54753 AKR1C7P-201ENST00000305623 895 ntBASIC19.03■□□□□ 0.64
EPHB3P54753 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
EPHB3P54753 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.03■□□□□ 0.64
EPHB3P54753 MTCL1P1-201ENST00000446207 792 ntBASIC19.03■□□□□ 0.64
EPHB3P54753 AL662844.1-201ENST00000546340 181 ntBASIC19.03■□□□□ 0.64
EPHB3P54753 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.03■□□□□ 0.64
EPHB3P54753 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.03■□□□□ 0.64
EPHB3P54753 AC114341.1-201ENST00000618070 349 ntBASIC19.03■□□□□ 0.64
EPHB3P54753 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.03■□□□□ 0.64
EPHB3P54753 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
EPHB3P54753 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
EPHB3P54753 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
EPHB3P54753 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
EPHB3P54753 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
EPHB3P54753 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.02■□□□□ 0.64
EPHB3P54753 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
EPHB3P54753 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.02■□□□□ 0.64
EPHB3P54753 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.02■□□□□ 0.64
EPHB3P54753 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
EPHB3P54753 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
EPHB3P54753 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.02■□□□□ 0.64
EPHB3P54753 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
EPHB3P54753 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.02■□□□□ 0.64
EPHB3P54753 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
EPHB3P54753 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
EPHB3P54753 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
EPHB3P54753 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
EPHB3P54753 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.02■□□□□ 0.64
EPHB3P54753 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.02■□□□□ 0.64
EPHB3P54753 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.02■□□□□ 0.64
EPHB3P54753 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.02■□□□□ 0.64
EPHB3P54753 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
EPHB3P54753 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.02■□□□□ 0.64
EPHB3P54753 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
EPHB3P54753 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.64
EPHB3P54753 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
EPHB3P54753 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
EPHB3P54753 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
EPHB3P54753 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
EPHB3P54753 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
EPHB3P54753 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
EPHB3P54753 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
EPHB3P54753 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
EPHB3P54753 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.02■□□□□ 0.63
EPHB3P54753 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
EPHB3P54753 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
EPHB3P54753 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
EPHB3P54753 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
EPHB3P54753 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
EPHB3P54753 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
EPHB3P54753 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
EPHB3P54753 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
EPHB3P54753 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
EPHB3P54753 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
EPHB3P54753 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.01■□□□□ 0.63
EPHB3P54753 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.01■□□□□ 0.63
EPHB3P54753 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.01■□□□□ 0.63
EPHB3P54753 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.01■□□□□ 0.63
EPHB3P54753 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.01■□□□□ 0.63
EPHB3P54753 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
EPHB3P54753 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
EPHB3P54753 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
EPHB3P54753 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
EPHB3P54753 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
EPHB3P54753 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
EPHB3P54753 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
EPHB3P54753 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
EPHB3P54753 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
EPHB3P54753 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
EPHB3P54753 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.01■□□□□ 0.63
EPHB3P54753 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
EPHB3P54753 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19■□□□□ 0.63
EPHB3P54753 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19■□□□□ 0.63
EPHB3P54753 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC19■□□□□ 0.63
EPHB3P54753 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
EPHB3P54753 HCG11-201ENST00000411553 5696 ntBASIC19■□□□□ 0.63
EPHB3P54753 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
EPHB3P54753 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19■□□□□ 0.63
EPHB3P54753 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
EPHB3P54753 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
EPHB3P54753 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19■□□□□ 0.63
EPHB3P54753 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19■□□□□ 0.63
EPHB3P54753 KRT18P65-201ENST00000439811 1286 ntBASIC19■□□□□ 0.63
EPHB3P54753 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
EPHB3P54753 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19■□□□□ 0.63
EPHB3P54753 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19■□□□□ 0.63
EPHB3P54753 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19■□□□□ 0.63
EPHB3P54753 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19■□□□□ 0.63
EPHB3P54753 AC106795.1-205ENST00000512851 1056 ntBASIC19■□□□□ 0.63
EPHB3P54753 AF238378.1-201ENST00000526806 358 ntBASIC19■□□□□ 0.63
EPHB3P54753 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
EPHB3P54753 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
EPHB3P54753 AC005336.2-201ENST00000593183 939 ntBASIC19■□□□□ 0.63
EPHB3P54753 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms