Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 UROS-202ENST00000368778 1556 ntTSL 2 BASIC25.16■■□□□ 1.62
MSH6P52701 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
MSH6P52701 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
MSH6P52701 FP475955.4-201ENST00000623131 1990 ntBASIC25.16■■□□□ 1.62
MSH6P52701 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC25.16■■□□□ 1.62
MSH6P52701 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
MSH6P52701 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
MSH6P52701 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC25.16■■□□□ 1.62
MSH6P52701 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC25.16■■□□□ 1.62
MSH6P52701 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
MSH6P52701 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
MSH6P52701 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
MSH6P52701 CD82-202ENST00000342935 967 ntTSL 5 BASIC25.16■■□□□ 1.62
MSH6P52701 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC25.16■■□□□ 1.62
MSH6P52701 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
MSH6P52701 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC25.16■■□□□ 1.62
MSH6P52701 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC25.16■■□□□ 1.62
MSH6P52701 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
MSH6P52701 COX5A-202ENST00000562233 441 ntTSL 3 BASIC25.16■■□□□ 1.62
MSH6P52701 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC25.16■■□□□ 1.62
MSH6P52701 AC093028.1-201ENST00000622998 982 ntBASIC25.16■■□□□ 1.62
MSH6P52701 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC25.16■■□□□ 1.62
MSH6P52701 HEIH-201ENST00000623091 1652 ntBASIC25.16■■□□□ 1.62
MSH6P52701 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC25.15■■□□□ 1.62
MSH6P52701 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
MSH6P52701 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
MSH6P52701 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC25.15■■□□□ 1.62
MSH6P52701 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC25.15■■□□□ 1.62
MSH6P52701 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
MSH6P52701 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
MSH6P52701 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
MSH6P52701 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC25.15■■□□□ 1.62
MSH6P52701 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC25.15■■□□□ 1.62
MSH6P52701 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
MSH6P52701 PTMS-202ENST00000389462 773 ntTSL 2 BASIC25.15■■□□□ 1.62
MSH6P52701 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC25.15■■□□□ 1.62
MSH6P52701 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
MSH6P52701 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC25.15■■□□□ 1.62
MSH6P52701 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
MSH6P52701 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
MSH6P52701 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
MSH6P52701 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
MSH6P52701 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
MSH6P52701 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
MSH6P52701 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
MSH6P52701 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
MSH6P52701 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
MSH6P52701 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
MSH6P52701 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC25.14■■□□□ 1.61
MSH6P52701 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
MSH6P52701 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC25.14■■□□□ 1.61
MSH6P52701 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC25.14■■□□□ 1.61
MSH6P52701 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC25.14■■□□□ 1.61
MSH6P52701 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC25.14■■□□□ 1.61
MSH6P52701 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC25.14■■□□□ 1.61
MSH6P52701 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.61
MSH6P52701 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
MSH6P52701 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
MSH6P52701 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
MSH6P52701 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.61
MSH6P52701 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC25.14■■□□□ 1.61
MSH6P52701 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
MSH6P52701 MTMR9LP-203ENST00000426597 1545 ntBASIC25.13■■□□□ 1.61
MSH6P52701 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
MSH6P52701 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC25.13■■□□□ 1.61
MSH6P52701 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MSH6P52701 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC25.13■■□□□ 1.61
MSH6P52701 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MSH6P52701 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
MSH6P52701 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
MSH6P52701 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MSH6P52701 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC25.13■■□□□ 1.61
MSH6P52701 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MSH6P52701 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC25.13■■□□□ 1.61
MSH6P52701 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
MSH6P52701 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
MSH6P52701 METTL26-205ENST00000397666 726 ntTSL 2 BASIC25.13■■□□□ 1.61
MSH6P52701 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC25.13■■□□□ 1.61
MSH6P52701 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC25.13■■□□□ 1.61
MSH6P52701 GREM1-201ENST00000560677 623 ntTSL 4 BASIC25.13■■□□□ 1.61
MSH6P52701 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
MSH6P52701 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC25.13■■□□□ 1.61
MSH6P52701 MED29-202ENST00000594368 1471 ntTSL 2 BASIC25.13■■□□□ 1.61
MSH6P52701 AL024508.2-201ENST00000607749 1894 ntBASIC25.13■■□□□ 1.61
MSH6P52701 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC25.13■■□□□ 1.61
MSH6P52701 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
MSH6P52701 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MSH6P52701 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC25.13■■□□□ 1.61
MSH6P52701 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC25.12■■□□□ 1.61
MSH6P52701 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH6P52701 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH6P52701 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
MSH6P52701 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH6P52701 CD9-202ENST00000382515 1229 ntTSL 5 BASIC25.12■■□□□ 1.61
MSH6P52701 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC25.12■■□□□ 1.61
MSH6P52701 TSEN15P1-201ENST00000423257 515 ntBASIC25.12■■□□□ 1.61
MSH6P52701 CEND1P1-201ENST00000451006 455 ntBASIC25.12■■□□□ 1.61
MSH6P52701 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC25.12■■□□□ 1.61
MSH6P52701 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC25.12■■□□□ 1.61
MSH6P52701 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms