Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.16■□□□□ 0.34
RFX3P48380 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
RFX3P48380 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
RFX3P48380 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
RFX3P48380 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
RFX3P48380 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.16■□□□□ 0.34
RFX3P48380 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
RFX3P48380 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.16■□□□□ 0.34
RFX3P48380 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 LIN28AP1-201ENST00000429574 405 ntBASIC17.16■□□□□ 0.34
RFX3P48380 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.16■□□□□ 0.34
RFX3P48380 ATP5G1P1-201ENST00000448724 379 ntBASIC17.16■□□□□ 0.34
RFX3P48380 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.16■□□□□ 0.34
RFX3P48380 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
RFX3P48380 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.16■□□□□ 0.34
RFX3P48380 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.16■□□□□ 0.34
RFX3P48380 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.16■□□□□ 0.34
RFX3P48380 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
RFX3P48380 AC145285.6-201ENST00000604632 637 ntBASIC17.16■□□□□ 0.34
RFX3P48380 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
RFX3P48380 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
RFX3P48380 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 AC135050.7-201ENST00000624508 2218 ntBASIC17.16■□□□□ 0.34
RFX3P48380 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.16■□□□□ 0.34
RFX3P48380 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.16■□□□□ 0.34
RFX3P48380 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX3P48380 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX3P48380 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX3P48380 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX3P48380 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RFX3P48380 MYLKP1-201ENST00000509077 1580 ntBASIC17.15■□□□□ 0.34
RFX3P48380 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
RFX3P48380 FZD10-202ENST00000539839 3282 ntBASIC17.15■□□□□ 0.34
RFX3P48380 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
RFX3P48380 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX3P48380 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
RFX3P48380 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
RFX3P48380 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.15■□□□□ 0.34
RFX3P48380 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.15■□□□□ 0.34
RFX3P48380 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RFX3P48380 AC009947.2-201ENST00000444014 672 ntBASIC17.15■□□□□ 0.34
RFX3P48380 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.15■□□□□ 0.34
RFX3P48380 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.15■□□□□ 0.34
RFX3P48380 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.15■□□□□ 0.34
RFX3P48380 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.15■□□□□ 0.34
RFX3P48380 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX3P48380 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
RFX3P48380 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX3P48380 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX3P48380 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
RFX3P48380 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX3P48380 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX3P48380 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX3P48380 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.15■□□□□ 0.34
RFX3P48380 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.15■□□□□ 0.34
RFX3P48380 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX3P48380 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.15■□□□□ 0.34
RFX3P48380 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX3P48380 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.34
RFX3P48380 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.14■□□□□ 0.33
RFX3P48380 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.14■□□□□ 0.33
RFX3P48380 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.14■□□□□ 0.33
RFX3P48380 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.14■□□□□ 0.33
RFX3P48380 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
RFX3P48380 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.14■□□□□ 0.33
RFX3P48380 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.14■□□□□ 0.33
RFX3P48380 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.14■□□□□ 0.33
RFX3P48380 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.14■□□□□ 0.33
RFX3P48380 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.14■□□□□ 0.33
RFX3P48380 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.14■□□□□ 0.33
RFX3P48380 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms