Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
RPA3P35244 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.47■□□□□ 0.55
RPA3P35244 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 UNC93B2-201ENST00000285383 730 ntBASIC18.47■□□□□ 0.55
RPA3P35244 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.47■□□□□ 0.55
RPA3P35244 AC008040.2-201ENST00000461049 708 ntBASIC18.47■□□□□ 0.55
RPA3P35244 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.47■□□□□ 0.55
RPA3P35244 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
RPA3P35244 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
RPA3P35244 SLC25A1P4-201ENST00000567977 778 ntBASIC18.47■□□□□ 0.55
RPA3P35244 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.47■□□□□ 0.55
RPA3P35244 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.47■□□□□ 0.55
RPA3P35244 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPA3P35244 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPA3P35244 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RPA3P35244 PP12613-201ENST00000424958 2230 ntBASIC18.46■□□□□ 0.55
RPA3P35244 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RPA3P35244 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPA3P35244 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPA3P35244 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.46■□□□□ 0.55
RPA3P35244 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.46■□□□□ 0.55
RPA3P35244 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.46■□□□□ 0.55
RPA3P35244 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RPA3P35244 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPA3P35244 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPA3P35244 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPA3P35244 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RPA3P35244 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.46■□□□□ 0.55
RPA3P35244 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.46■□□□□ 0.55
RPA3P35244 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.46■□□□□ 0.55
RPA3P35244 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RPA3P35244 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.46■□□□□ 0.55
RPA3P35244 PRSS44-201ENST00000515154 1146 ntBASIC18.46■□□□□ 0.55
RPA3P35244 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPA3P35244 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.46■□□□□ 0.55
RPA3P35244 AP000692.2-201ENST00000608391 879 ntBASIC18.46■□□□□ 0.55
RPA3P35244 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.46■□□□□ 0.55
RPA3P35244 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPA3P35244 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.46■□□□□ 0.55
RPA3P35244 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RPA3P35244 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPA3P35244 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.46■□□□□ 0.55
RPA3P35244 AL096828.2-201ENST00000567259 1965 ntBASIC18.46■□□□□ 0.55
RPA3P35244 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPA3P35244 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RPA3P35244 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RPA3P35244 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RPA3P35244 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
RPA3P35244 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.54
RPA3P35244 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
RPA3P35244 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.46■□□□□ 0.54
RPA3P35244 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPA3P35244 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.45■□□□□ 0.54
RPA3P35244 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.45■□□□□ 0.54
RPA3P35244 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RPA3P35244 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPA3P35244 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPA3P35244 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.45■□□□□ 0.54
RPA3P35244 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RPA3P35244 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPA3P35244 HTR7P1-202ENST00000624664 4411 ntBASIC18.45■□□□□ 0.54
RPA3P35244 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPA3P35244 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.45■□□□□ 0.54
RPA3P35244 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPA3P35244 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.45■□□□□ 0.54
RPA3P35244 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPA3P35244 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
RPA3P35244 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPA3P35244 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.45■□□□□ 0.54
RPA3P35244 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPA3P35244 RBM17P1-201ENST00000453646 1190 ntBASIC18.45■□□□□ 0.54
RPA3P35244 AC097488.1-201ENST00000507834 756 ntBASIC18.45■□□□□ 0.54
RPA3P35244 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
RPA3P35244 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RPA3P35244 AL355075.4-201ENST00000554988 638 ntBASIC18.45■□□□□ 0.54
RPA3P35244 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.45■□□□□ 0.54
RPA3P35244 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.45■□□□□ 0.54
RPA3P35244 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.45■□□□□ 0.54
RPA3P35244 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPA3P35244 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPA3P35244 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPA3P35244 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
RPA3P35244 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPA3P35244 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms