Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCANP13611 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.78■□□□□ 0.6
VCANP13611 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
VCANP13611 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
VCANP13611 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VCANP13611 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.78■□□□□ 0.6
VCANP13611 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
VCANP13611 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCANP13611 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCANP13611 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.78■□□□□ 0.6
VCANP13611 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCANP13611 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCANP13611 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.77■□□□□ 0.6
VCANP13611 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VCANP13611 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
VCANP13611 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.77■□□□□ 0.6
VCANP13611 AC055876.3-201ENST00000431496 288 ntBASIC18.77■□□□□ 0.6
VCANP13611 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.77■□□□□ 0.6
VCANP13611 AC136632.2-201ENST00000512891 861 ntBASIC18.77■□□□□ 0.6
VCANP13611 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC18.77■□□□□ 0.6
VCANP13611 AC138649.4-201ENST00000612222 287 ntBASIC18.77■□□□□ 0.6
VCANP13611 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCANP13611 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.77■□□□□ 0.6
VCANP13611 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
VCANP13611 AC112777.1-201ENST00000540175 1423 ntBASIC18.77■□□□□ 0.6
VCANP13611 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
VCANP13611 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCANP13611 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.77■□□□□ 0.6
VCANP13611 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.77■□□□□ 0.6
VCANP13611 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.77■□□□□ 0.6
VCANP13611 FAM86GP-201ENST00000448322 971 ntBASIC18.77■□□□□ 0.6
VCANP13611 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
VCANP13611 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.77■□□□□ 0.6
VCANP13611 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.77■□□□□ 0.59
VCANP13611 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
VCANP13611 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VCANP13611 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.77■□□□□ 0.59
VCANP13611 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
VCANP13611 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCANP13611 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
VCANP13611 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCANP13611 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCANP13611 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCANP13611 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCANP13611 RPS2P32-201ENST00000439199 892 ntBASIC18.76■□□□□ 0.59
VCANP13611 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.76■□□□□ 0.59
VCANP13611 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
VCANP13611 AC034236.2-201ENST00000606662 1610 ntBASIC18.76■□□□□ 0.59
VCANP13611 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCANP13611 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCANP13611 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCANP13611 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCANP13611 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.76■□□□□ 0.59
VCANP13611 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.76■□□□□ 0.59
VCANP13611 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCANP13611 VN2R19P-201ENST00000442399 1052 ntBASIC18.76■□□□□ 0.59
VCANP13611 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.76■□□□□ 0.59
VCANP13611 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCANP13611 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCANP13611 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCANP13611 AC004461.1-201ENST00000412461 403 ntBASIC18.76■□□□□ 0.59
VCANP13611 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC18.76■□□□□ 0.59
VCANP13611 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.76■□□□□ 0.59
VCANP13611 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC18.76■□□□□ 0.59
VCANP13611 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.76■□□□□ 0.59
VCANP13611 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.76■□□□□ 0.59
VCANP13611 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCANP13611 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.76■□□□□ 0.59
VCANP13611 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCANP13611 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
VCANP13611 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
VCANP13611 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.75■□□□□ 0.59
VCANP13611 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.75■□□□□ 0.59
VCANP13611 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18.75■□□□□ 0.59
VCANP13611 AC004835.2-201ENST00000603762 682 ntBASIC18.75■□□□□ 0.59
VCANP13611 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.75■□□□□ 0.59
VCANP13611 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.75■□□□□ 0.59
VCANP13611 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.75■□□□□ 0.59
VCANP13611 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
VCANP13611 AFG3L1P-217ENST00000557444 2447 ntBASIC18.75■□□□□ 0.59
VCANP13611 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VCANP13611 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms