Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
COL4A1P02462 CROCCP3-202ENST00000420820 1947 ntBASIC22.24■■□□□ 1.15
COL4A1P02462 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A1P02462 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A1P02462 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC22.24■■□□□ 1.15
COL4A1P02462 HIST2H3DP1-201ENST00000401004 416 ntBASIC22.23■■□□□ 1.15
COL4A1P02462 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC22.23■■□□□ 1.15
COL4A1P02462 AC007967.3-201ENST00000434308 558 ntBASIC22.23■■□□□ 1.15
COL4A1P02462 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC22.23■■□□□ 1.15
COL4A1P02462 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
COL4A1P02462 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC22.23■■□□□ 1.15
COL4A1P02462 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL4A1P02462 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL4A1P02462 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL4A1P02462 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC22.23■■□□□ 1.15
COL4A1P02462 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
COL4A1P02462 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC22.23■■□□□ 1.15
COL4A1P02462 AC009533.2-201ENST00000543664 586 ntBASIC22.23■■□□□ 1.15
COL4A1P02462 IRF8-202ENST00000562492 946 ntTSL 3 BASIC22.23■■□□□ 1.15
COL4A1P02462 AC034105.1-201ENST00000563488 319 ntBASIC22.23■■□□□ 1.15
COL4A1P02462 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC22.23■■□□□ 1.15
COL4A1P02462 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
COL4A1P02462 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL4A1P02462 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL4A1P02462 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
COL4A1P02462 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A1P02462 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A1P02462 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC22.22■■□□□ 1.15
COL4A1P02462 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A1P02462 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A1P02462 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
COL4A1P02462 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A1P02462 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
COL4A1P02462 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC22.22■■□□□ 1.15
COL4A1P02462 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC22.22■■□□□ 1.15
COL4A1P02462 AC098831.1-202ENST00000438821 336 ntBASIC22.22■■□□□ 1.15
COL4A1P02462 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A1P02462 KRT18P58-201ENST00000527480 1120 ntBASIC22.22■■□□□ 1.15
COL4A1P02462 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC22.22■■□□□ 1.15
COL4A1P02462 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
COL4A1P02462 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC22.22■■□□□ 1.15
COL4A1P02462 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A1P02462 PNMT-203ENST00000581428 677 ntTSL 2 BASIC22.22■■□□□ 1.15
COL4A1P02462 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC22.22■■□□□ 1.15
COL4A1P02462 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A1P02462 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A1P02462 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A1P02462 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COL4A1P02462 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC22.21■■□□□ 1.15
COL4A1P02462 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC22.21■■□□□ 1.15
COL4A1P02462 FUOM-202ENST00000368551 628 ntTSL 3 BASIC22.21■■□□□ 1.15
COL4A1P02462 RPL13AP23-201ENST00000480739 586 ntBASIC22.21■■□□□ 1.15
COL4A1P02462 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
COL4A1P02462 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC22.21■■□□□ 1.15
COL4A1P02462 PRKN-208ENST00000610470 531 ntTSL 2 BASIC22.21■■□□□ 1.15
COL4A1P02462 PRKN-209ENST00000612485 225 ntTSL 5 BASIC22.21■■□□□ 1.15
COL4A1P02462 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC22.21■■□□□ 1.15
COL4A1P02462 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COL4A1P02462 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
COL4A1P02462 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC22.21■■□□□ 1.15
COL4A1P02462 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
COL4A1P02462 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC22.21■■□□□ 1.15
COL4A1P02462 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
COL4A1P02462 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COL4A1P02462 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COL4A1P02462 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC22.2■■□□□ 1.15
COL4A1P02462 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
COL4A1P02462 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
COL4A1P02462 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC22.2■■□□□ 1.15
COL4A1P02462 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC22.2■■□□□ 1.15
COL4A1P02462 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC22.2■■□□□ 1.15
COL4A1P02462 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
COL4A1P02462 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A1P02462 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A1P02462 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC22.2■■□□□ 1.14
COL4A1P02462 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A1P02462 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC22.2■■□□□ 1.14
COL4A1P02462 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A1P02462 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A1P02462 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A1P02462 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A1P02462 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A1P02462 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A1P02462 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A1P02462 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A1P02462 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC22.2■■□□□ 1.14
COL4A1P02462 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A1P02462 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC22.2■■□□□ 1.14
COL4A1P02462 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A1P02462 PIN1-206ENST00000587625 878 ntTSL 2 BASIC22.2■■□□□ 1.14
COL4A1P02462 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC22.2■■□□□ 1.14
COL4A1P02462 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A1P02462 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
COL4A1P02462 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC22.19■■□□□ 1.14
COL4A1P02462 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
COL4A1P02462 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC22.19■■□□□ 1.14
COL4A1P02462 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC22.19■■□□□ 1.14
COL4A1P02462 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL4A1P02462 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL4A1P02462 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC22.19■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms