Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.86■□□□□ 0.45
SIX3O95343 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.86■□□□□ 0.45
SIX3O95343 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SIX3O95343 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SIX3O95343 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX3O95343 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX3O95343 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX3O95343 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX3O95343 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX3O95343 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX3O95343 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SIX3O95343 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX3O95343 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX3O95343 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.85■□□□□ 0.45
SIX3O95343 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
SIX3O95343 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SIX3O95343 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.85■□□□□ 0.45
SIX3O95343 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SIX3O95343 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.85■□□□□ 0.45
SIX3O95343 KRT8P7-201ENST00000533003 1432 ntBASIC17.85■□□□□ 0.45
SIX3O95343 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.85■□□□□ 0.45
SIX3O95343 KRT8P9-201ENST00000558927 1449 ntBASIC17.85■□□□□ 0.45
SIX3O95343 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.85■□□□□ 0.45
SIX3O95343 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.85■□□□□ 0.45
SIX3O95343 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SIX3O95343 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.85■□□□□ 0.45
SIX3O95343 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX3O95343 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.85■□□□□ 0.45
SIX3O95343 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.85■□□□□ 0.45
SIX3O95343 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX3O95343 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX3O95343 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
SIX3O95343 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
SIX3O95343 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX3O95343 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
SIX3O95343 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX3O95343 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX3O95343 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SIX3O95343 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX3O95343 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SIX3O95343 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
SIX3O95343 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 SLC25A6P5-201ENST00000435663 894 ntBASIC17.84■□□□□ 0.45
SIX3O95343 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.84■□□□□ 0.45
SIX3O95343 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.84■□□□□ 0.45
SIX3O95343 C2orf69P3-201ENST00000565542 1120 ntBASIC17.84■□□□□ 0.45
SIX3O95343 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.84■□□□□ 0.45
SIX3O95343 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 AC112497.1-201ENST00000624824 639 ntBASIC17.84■□□□□ 0.45
SIX3O95343 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX3O95343 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX3O95343 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.84■□□□□ 0.45
SIX3O95343 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SIX3O95343 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
SIX3O95343 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.83■□□□□ 0.45
SIX3O95343 AC012317.2-201ENST00000623305 2251 ntBASIC17.83■□□□□ 0.45
SIX3O95343 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
SIX3O95343 CYP2D8P-201ENST00000433633 1490 ntBASIC17.83■□□□□ 0.45
SIX3O95343 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
SIX3O95343 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SIX3O95343 KRT17P2-201ENST00000300992 1314 ntBASIC17.83■□□□□ 0.44
SIX3O95343 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.83■□□□□ 0.44
SIX3O95343 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SIX3O95343 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SIX3O95343 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SIX3O95343 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
SIX3O95343 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SIX3O95343 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.83■□□□□ 0.44
SIX3O95343 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.83■□□□□ 0.44
SIX3O95343 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.83■□□□□ 0.44
SIX3O95343 AP006294.2-201ENST00000641667 209 ntBASIC17.83■□□□□ 0.44
SIX3O95343 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms