Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.7■□□□□ 0.74
RNF40O75150 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.7■□□□□ 0.74
RNF40O75150 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.7■□□□□ 0.74
RNF40O75150 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.7■□□□□ 0.74
RNF40O75150 AL023803.3-201ENST00000615559 522 ntBASIC19.7■□□□□ 0.74
RNF40O75150 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.7■□□□□ 0.74
RNF40O75150 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.7■□□□□ 0.74
RNF40O75150 ANO7L1-203ENST00000602586 1720 ntBASIC19.7■□□□□ 0.74
RNF40O75150 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.7■□□□□ 0.74
RNF40O75150 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
RNF40O75150 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF40O75150 TNRC18P3-201ENST00000441896 2691 ntBASIC19.69■□□□□ 0.74
RNF40O75150 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF40O75150 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF40O75150 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RNF40O75150 PCDHA12-202ENST00000613593 2588 ntBASIC19.69■□□□□ 0.74
RNF40O75150 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF40O75150 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
RNF40O75150 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RNF40O75150 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.69■□□□□ 0.74
RNF40O75150 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
RNF40O75150 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF40O75150 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.69■□□□□ 0.74
RNF40O75150 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF40O75150 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.69■□□□□ 0.74
RNF40O75150 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF40O75150 TSPY17P-201ENST00000450329 467 ntBASIC19.69■□□□□ 0.74
RNF40O75150 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
RNF40O75150 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.69■□□□□ 0.74
RNF40O75150 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RNF40O75150 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.69■□□□□ 0.74
RNF40O75150 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
RNF40O75150 AC011558.1-201ENST00000623459 338 ntBASIC19.69■□□□□ 0.74
RNF40O75150 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF40O75150 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.69■□□□□ 0.74
RNF40O75150 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF40O75150 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF40O75150 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.69■□□□□ 0.74
RNF40O75150 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF40O75150 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF40O75150 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF40O75150 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
RNF40O75150 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.68■□□□□ 0.74
RNF40O75150 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF40O75150 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.68■□□□□ 0.74
RNF40O75150 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.68■□□□□ 0.74
RNF40O75150 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.68■□□□□ 0.74
RNF40O75150 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
RNF40O75150 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
RNF40O75150 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.68■□□□□ 0.74
RNF40O75150 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF40O75150 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF40O75150 BCL2-203ENST00000589955 5011 ntBASIC19.68■□□□□ 0.74
RNF40O75150 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.68■□□□□ 0.74
RNF40O75150 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF40O75150 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF40O75150 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.68■□□□□ 0.74
RNF40O75150 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.68■□□□□ 0.74
RNF40O75150 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.68■□□□□ 0.74
RNF40O75150 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.68■□□□□ 0.74
RNF40O75150 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
RNF40O75150 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.68■□□□□ 0.74
RNF40O75150 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
RNF40O75150 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
RNF40O75150 AC126763.1-201ENST00000552015 2118 ntBASIC19.68■□□□□ 0.74
RNF40O75150 AL160286.2-201ENST00000567150 934 ntBASIC19.68■□□□□ 0.74
RNF40O75150 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.68■□□□□ 0.74
RNF40O75150 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
RNF40O75150 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
RNF40O75150 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
RNF40O75150 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.68■□□□□ 0.74
RNF40O75150 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.68■□□□□ 0.74
RNF40O75150 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF40O75150 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF40O75150 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF40O75150 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF40O75150 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF40O75150 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF40O75150 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
RNF40O75150 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF40O75150 AC073592.3-201ENST00000625118 1834 ntBASIC19.67■□□□□ 0.74
RNF40O75150 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19.67■□□□□ 0.74
RNF40O75150 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF40O75150 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF40O75150 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RNF40O75150 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF40O75150 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF40O75150 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.67■□□□□ 0.74
RNF40O75150 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RNF40O75150 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms