Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 TREML5P-201ENST00000421694 576 ntBASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 DDX43P3-201ENST00000441064 443 ntBASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 TIMM8BP1-201ENST00000452384 211 ntBASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 AC010654.1-201ENST00000615722 808 ntBASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 AC009154.2-201ENST00000621177 724 ntBASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 AC007064.4-201ENST00000637740 555 ntBASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC85CA6NKD9 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 AL133338.1-201ENST00000565695 1517 ntBASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 AC005237.2-201ENST00000434368 219 ntBASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 RPS15P9-201ENST00000494093 319 ntBASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 AC010336.2-201ENST00000564226 506 ntBASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC85CA6NKD9 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 AC125807.1-201ENST00000483097 614 ntBASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 SERBP1P5-201ENST00000510079 1181 ntBASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 AC008687.5-201ENST00000593746 558 ntBASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 AC023141.13-201ENST00000604991 943 ntBASIC20.08■□□□□ 0.81
CCDC85CA6NKD9 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC85CA6NKD9 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC85CA6NKD9 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC85CA6NKD9 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC85CA6NKD9 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 POLD4-207ENST00000531239 584 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC85CA6NKD9 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms