Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.98■□□□□ 0.63
AP4E1Q9UPM8 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 AL096828.2-201ENST00000567259 1965 ntBASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 REXO1L9P-201ENST00000604264 2108 ntBASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 AC006011.2-201ENST00000621313 1158 ntBASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
AP4E1Q9UPM8 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 HCG11-201ENST00000411553 5696 ntBASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 PVRIG2P-201ENST00000435460 978 ntBASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 RASA4DP-201ENST00000460726 1199 ntBASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
AP4E1Q9UPM8 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 NOC2LP1-202ENST00000452600 2235 ntBASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 RCN1P1-201ENST00000400413 996 ntBASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 SPDYE15P-201ENST00000424157 909 ntBASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
AP4E1Q9UPM8 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms