Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS28Q9UK41 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS28Q9UK41 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS28Q9UK41 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS28Q9UK41 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.8■□□□□ 0.6
VPS28Q9UK41 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS28Q9UK41 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS28Q9UK41 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.8■□□□□ 0.6
VPS28Q9UK41 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS28Q9UK41 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.8■□□□□ 0.6
VPS28Q9UK41 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS28Q9UK41 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS28Q9UK41 AL390961.4-201ENST00000623958 2535 ntBASIC18.8■□□□□ 0.6
VPS28Q9UK41 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS28Q9UK41 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.8■□□□□ 0.6
VPS28Q9UK41 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS28Q9UK41 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS28Q9UK41 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS28Q9UK41 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS28Q9UK41 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS28Q9UK41 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
VPS28Q9UK41 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS28Q9UK41 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS28Q9UK41 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
VPS28Q9UK41 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS28Q9UK41 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
VPS28Q9UK41 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
VPS28Q9UK41 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS28Q9UK41 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.79■□□□□ 0.6
VPS28Q9UK41 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.79■□□□□ 0.6
VPS28Q9UK41 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.79■□□□□ 0.6
VPS28Q9UK41 AL162741.1-201ENST00000565563 1558 ntBASIC18.79■□□□□ 0.6
VPS28Q9UK41 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS28Q9UK41 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS28Q9UK41 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
VPS28Q9UK41 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS28Q9UK41 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
VPS28Q9UK41 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.78■□□□□ 0.6
VPS28Q9UK41 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS28Q9UK41 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 MIR662-201ENST00000384847 95 ntBASIC18.78■□□□□ 0.6
VPS28Q9UK41 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
VPS28Q9UK41 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.78■□□□□ 0.6
VPS28Q9UK41 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS28Q9UK41 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
VPS28Q9UK41 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS28Q9UK41 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS28Q9UK41 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS28Q9UK41 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS28Q9UK41 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS28Q9UK41 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS28Q9UK41 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS28Q9UK41 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS28Q9UK41 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS28Q9UK41 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS28Q9UK41 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS28Q9UK41 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS28Q9UK41 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS28Q9UK41 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS28Q9UK41 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.77■□□□□ 0.6
VPS28Q9UK41 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS28Q9UK41 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS28Q9UK41 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS28Q9UK41 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
VPS28Q9UK41 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS28Q9UK41 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.77■□□□□ 0.6
VPS28Q9UK41 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms