Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 AC079602.3-201ENST00000623931 403 ntBASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 NEFHP1-201ENST00000412845 2629 ntBASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 HOMER2P1-201ENST00000455653 964 ntBASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 AC009065.1-201ENST00000564055 1225 ntBASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.68■□□□□ 0.42
CUEDC1Q9NWM3 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 AC092597.1-201ENST00000487352 616 ntBASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 AL691432.3-201ENST00000621860 400 ntBASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 ESPNP-201ENST00000270691 2015 ntBASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CUEDC1Q9NWM3 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 AC112907.2-201ENST00000448639 330 ntBASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 AL121956.5-201ENST00000625261 221 ntBASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
CUEDC1Q9NWM3 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms