Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.82■■□□□ 1.08
ZNF541Q9H0D2 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
ZNF541Q9H0D2 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 AC254562.1-201ENST00000417586 456 ntBASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 WDR53-203ENST00000429115 683 ntTSL 2 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 AC092364.2-202ENST00000597012 1073 ntBASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 ORC5-208ENST00000626700 344 ntTSL 3 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 AC092865.6-201ENST00000642101 219 ntBASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 AC097374.2-201ENST00000618617 1306 ntBASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
ZNF541Q9H0D2 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 AC106028.4-201ENST00000614509 607 ntBASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 MIR1199-201ENST00000621445 119 ntBASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 AL645939.2-201ENST00000427340 991 ntBASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 AC005593.1-201ENST00000624894 515 ntBASIC21.8■■□□□ 1.08
ZNF541Q9H0D2 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 CNN2P11-201ENST00000429351 262 ntBASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 SRP19-202ENST00000445150 833 ntTSL 2 BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 ETFA-208ENST00000559602 792 ntTSL 3 BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
ZNF541Q9H0D2 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 AC079776.2-201ENST00000641154 1609 ntBASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 AL022326.1-202ENST00000641533 845 ntBASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms