Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
COL21A1Q96P44 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
COL21A1Q96P44 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
COL21A1Q96P44 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.3■□□□□ 0.36
COL21A1Q96P44 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.3■□□□□ 0.36
COL21A1Q96P44 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
COL21A1Q96P44 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL21A1Q96P44 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.3■□□□□ 0.36
COL21A1Q96P44 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.3■□□□□ 0.36
COL21A1Q96P44 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL21A1Q96P44 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL21A1Q96P44 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
COL21A1Q96P44 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL21A1Q96P44 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL21A1Q96P44 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL21A1Q96P44 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
COL21A1Q96P44 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL21A1Q96P44 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL21A1Q96P44 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL21A1Q96P44 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL21A1Q96P44 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL21A1Q96P44 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL21A1Q96P44 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.29■□□□□ 0.36
COL21A1Q96P44 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL21A1Q96P44 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.29■□□□□ 0.36
COL21A1Q96P44 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.29■□□□□ 0.36
COL21A1Q96P44 MIR4674-201ENST00000582457 87 ntBASIC17.29■□□□□ 0.36
COL21A1Q96P44 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.29■□□□□ 0.36
COL21A1Q96P44 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.29■□□□□ 0.36
COL21A1Q96P44 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
COL21A1Q96P44 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL21A1Q96P44 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL21A1Q96P44 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL21A1Q96P44 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL21A1Q96P44 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.29■□□□□ 0.36
COL21A1Q96P44 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
COL21A1Q96P44 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL21A1Q96P44 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.29■□□□□ 0.36
COL21A1Q96P44 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
COL21A1Q96P44 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
COL21A1Q96P44 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.28■□□□□ 0.36
COL21A1Q96P44 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
COL21A1Q96P44 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
COL21A1Q96P44 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
COL21A1Q96P44 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.28■□□□□ 0.36
COL21A1Q96P44 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.28■□□□□ 0.36
COL21A1Q96P44 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
COL21A1Q96P44 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 ECEL1P3-201ENST00000427961 737 ntBASIC17.28■□□□□ 0.36
COL21A1Q96P44 AL512604.3-201ENST00000569583 964 ntBASIC17.28■□□□□ 0.36
COL21A1Q96P44 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.28■□□□□ 0.36
COL21A1Q96P44 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.28■□□□□ 0.36
COL21A1Q96P44 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
COL21A1Q96P44 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 AL109659.2-201ENST00000606809 1674 ntBASIC17.28■□□□□ 0.36
COL21A1Q96P44 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
COL21A1Q96P44 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL21A1Q96P44 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL21A1Q96P44 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL21A1Q96P44 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.27■□□□□ 0.36
COL21A1Q96P44 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.27■□□□□ 0.36
COL21A1Q96P44 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.27■□□□□ 0.36
COL21A1Q96P44 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL21A1Q96P44 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.27■□□□□ 0.36
COL21A1Q96P44 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.27■□□□□ 0.36
COL21A1Q96P44 AC008556.1-201ENST00000610908 2040 ntBASIC17.27■□□□□ 0.36
COL21A1Q96P44 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL21A1Q96P44 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.27■□□□□ 0.36
COL21A1Q96P44 SLC25A3P1-201ENST00000443844 931 ntBASIC17.27■□□□□ 0.36
COL21A1Q96P44 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL21A1Q96P44 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.27■□□□□ 0.36
COL21A1Q96P44 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL21A1Q96P44 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.27■□□□□ 0.36
COL21A1Q96P44 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.27■□□□□ 0.36
COL21A1Q96P44 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.27■□□□□ 0.36
COL21A1Q96P44 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
COL21A1Q96P44 AC005363.2-201ENST00000618631 242 ntBASIC17.27■□□□□ 0.36
COL21A1Q96P44 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL21A1Q96P44 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL21A1Q96P44 AC135776.1-201ENST00000319817 2481 ntBASIC17.27■□□□□ 0.35
COL21A1Q96P44 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.27■□□□□ 0.35
COL21A1Q96P44 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.27■□□□□ 0.35
COL21A1Q96P44 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL21A1Q96P44 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms