Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 PCED1CP-201ENST00000419887 785 ntBASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 AL358472.4-201ENST00000633140 710 ntBASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 AC090340.1-201ENST00000620778 4980 ntBASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 AC005332.1-201ENST00000577698 1310 ntBASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 AC091076.1-201ENST00000610741 619 ntBASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD1Q96NR3 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 SDHAP2-201ENST00000455183 2001 ntBASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 SPDYE13P-201ENST00000445314 798 ntBASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD1Q96NR3 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 IER3-202ENST00000376377 1350 ntBASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 AL645929.1-201ENST00000420084 975 ntBASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 AP000550.4-202ENST00000639755 178 ntBASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms