Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 AC104390.1-201ENST00000555663 520 ntBASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 AL136038.4-201ENST00000603606 1261 ntBASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 AC010240.3-201ENST00000607688 395 ntBASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 AC006333.2-201ENST00000607957 2099 ntBASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
CLIP3Q96DZ5 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 AC079602.3-201ENST00000623931 403 ntBASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 AC068587.9-201ENST00000641814 219 ntBASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 AL391807.1-203ENST00000604392 2365 ntBASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 AC008894.3-201ENST00000624324 3103 ntBASIC17.61■□□□□ 0.41
CLIP3Q96DZ5 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms