Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
BRF1Q92994 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
BRF1Q92994 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
BRF1Q92994 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC21.53■■□□□ 1.04
BRF1Q92994 AP000523.1-201ENST00000398242 1049 ntBASIC21.53■■□□□ 1.04
BRF1Q92994 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.53■■□□□ 1.04
BRF1Q92994 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.53■■□□□ 1.04
BRF1Q92994 ATP5G1P1-201ENST00000448724 379 ntBASIC21.53■■□□□ 1.04
BRF1Q92994 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.53■■□□□ 1.04
BRF1Q92994 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.53■■□□□ 1.04
BRF1Q92994 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
BRF1Q92994 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.53■■□□□ 1.04
BRF1Q92994 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC21.53■■□□□ 1.04
BRF1Q92994 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC21.53■■□□□ 1.04
BRF1Q92994 AL157888.1-201ENST00000631930 593 ntBASIC21.53■■□□□ 1.04
BRF1Q92994 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.53■■□□□ 1.04
BRF1Q92994 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC21.53■■□□□ 1.04
BRF1Q92994 AC073508.3-201ENST00000619697 1419 ntBASIC21.53■■□□□ 1.04
BRF1Q92994 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC21.53■■□□□ 1.04
BRF1Q92994 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
BRF1Q92994 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
BRF1Q92994 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.52■■□□□ 1.04
BRF1Q92994 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
BRF1Q92994 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRF1Q92994 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRF1Q92994 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRF1Q92994 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
BRF1Q92994 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC21.52■■□□□ 1.04
BRF1Q92994 AC068880.1-201ENST00000507289 2297 ntBASIC21.52■■□□□ 1.04
BRF1Q92994 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
BRF1Q92994 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRF1Q92994 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRF1Q92994 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
BRF1Q92994 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.52■■□□□ 1.04
BRF1Q92994 AL137013.1-201ENST00000432946 1228 ntBASIC21.52■■□□□ 1.04
BRF1Q92994 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.52■■□□□ 1.04
BRF1Q92994 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC21.52■■□□□ 1.04
BRF1Q92994 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRF1Q92994 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.52■■□□□ 1.04
BRF1Q92994 AC092865.7-201ENST00000641832 219 ntBASIC21.52■■□□□ 1.04
BRF1Q92994 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRF1Q92994 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRF1Q92994 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
BRF1Q92994 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.52■■□□□ 1.03
BRF1Q92994 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.52■■□□□ 1.03
BRF1Q92994 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
BRF1Q92994 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.52■■□□□ 1.03
BRF1Q92994 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.51■■□□□ 1.03
BRF1Q92994 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
BRF1Q92994 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
BRF1Q92994 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC21.51■■□□□ 1.03
BRF1Q92994 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.51■■□□□ 1.03
BRF1Q92994 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
BRF1Q92994 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.51■■□□□ 1.03
BRF1Q92994 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
BRF1Q92994 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRF1Q92994 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRF1Q92994 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRF1Q92994 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRF1Q92994 AC005521.1-201ENST00000393351 872 ntBASIC21.51■■□□□ 1.03
BRF1Q92994 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
BRF1Q92994 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.51■■□□□ 1.03
BRF1Q92994 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
BRF1Q92994 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.51■■□□□ 1.03
BRF1Q92994 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.51■■□□□ 1.03
BRF1Q92994 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
BRF1Q92994 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRF1Q92994 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.51■■□□□ 1.03
BRF1Q92994 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
BRF1Q92994 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRF1Q92994 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRF1Q92994 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.51■■□□□ 1.03
BRF1Q92994 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF1Q92994 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
BRF1Q92994 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF1Q92994 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF1Q92994 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
BRF1Q92994 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.5■■□□□ 1.03
BRF1Q92994 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
BRF1Q92994 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.5■■□□□ 1.03
BRF1Q92994 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF1Q92994 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.5■■□□□ 1.03
BRF1Q92994 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC21.5■■□□□ 1.03
BRF1Q92994 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC21.5■■□□□ 1.03
BRF1Q92994 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.5■■□□□ 1.03
BRF1Q92994 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.5■■□□□ 1.03
BRF1Q92994 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.5■■□□□ 1.03
BRF1Q92994 REEP1-209ENST00000541910 969 ntTSL 2 BASIC21.5■■□□□ 1.03
BRF1Q92994 AL441883.1-201ENST00000566170 1045 ntBASIC21.5■■□□□ 1.03
BRF1Q92994 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
BRF1Q92994 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF1Q92994 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF1Q92994 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
BRF1Q92994 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF1Q92994 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
BRF1Q92994 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
BRF1Q92994 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF1Q92994 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF1Q92994 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF1Q92994 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms