Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 SLC25A6P5-201ENST00000435663 894 ntBASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 AC009102.3-201ENST00000623118 1491 ntBASIC18.97■□□□□ 0.63
ATG4AQ8WYN0 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 AP003041.3-201ENST00000527151 707 ntBASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 AP003071.4-201ENST00000562276 1284 ntBASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
ATG4AQ8WYN0 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 HCG11-201ENST00000411553 5696 ntBASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 AP005242.2-201ENST00000580065 1175 ntBASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 AP001412.1-201ENST00000608405 714 ntBASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 AL023803.3-201ENST00000615559 522 ntBASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4AQ8WYN0 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 MIR149-201ENST00000384879 89 ntBASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 KRT18P23-201ENST00000435622 1283 ntBASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.94■□□□□ 0.62
ATG4AQ8WYN0 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms